STRINGSTRING
piwil2 piwil2 nrde2 nrde2 tsnax tsnax pus10 pus10 LOC108439116 LOC108439116 asz1 asz1 piwil1 piwil1 drosha drosha tarbp2 tarbp2 zc3h7a zc3h7a srrt srrt srsf3 srsf3 ddx6 ddx6 cnot8 cnot8 helz helz MOV10 MOV10 MOV10-2 MOV10-2 LOC108441744 LOC108441744 xpo5 xpo5 cnot10 cnot10 trim71 trim71 LIMD1 LIMD1 ajuba ajuba ncbp2 ncbp2 tnrc6c tnrc6c LOC108430562 LOC108430562 mettl3 mettl3 LOC108424830 LOC108424830 adar adar SNIP1 SNIP1 LOC108424191 LOC108424191 vwa2 vwa2 LIN28B LIN28B cnot1 cnot1 LOC108413243 LOC108413243 henmt1 henmt1 LOC108444404 LOC108444404 snd1 snd1 LOC108427590 LOC108427590 eri1 eri1 zar1 zar1 tdrd9 tdrd9 tnrc6b tnrc6b LOC108413700 LOC108413700 lrrc27 lrrc27 LOC108437558 LOC108437558 tnrc6a tnrc6a nup155 nup155 fkbp6 fkbp6 LOC108433563 LOC108433563 ENSPNAP00000029845 ENSPNAP00000029845 spout1 spout1 dgcr8 dgcr8 EIF4ENIF1 EIF4ENIF1 MOV10L1 MOV10L1 disp2 disp2 cnot6l cnot6l cnot11 cnot11 zar1l zar1l LOC108432901 LOC108432901 dhx9 dhx9 prkra prkra cnot9 cnot9 TUT4 TUT4 LOC108428944 LOC108428944 pum1 pum1 NCBP1 NCBP1 ago2 ago2 LOC108441023 LOC108441023 MARF1 MARF1 exd1 exd1 LOC108444400 LOC108444400 dicer1 dicer1 LOC108413244 LOC108413244 LOC108429335 LOC108429335
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
piwil2Piwi-like RNA-mediated gene silencing 2; Belongs to the argonaute family. (1056 aa)
nrde2NRDE-2, necessary for RNA interference, domain containing. (1084 aa)
tsnaxTranslin-associated factor X. (277 aa)
pus10Pseudouridine synthase 10. (526 aa)
LOC108439116Zinc finger CCCH-type containing 7Ba. (989 aa)
asz1Ankyrin repeat, SAM and basic leucine zipper domain containing 1. (474 aa)
piwil1Piwi-like RNA-mediated gene silencing 1; Belongs to the argonaute family. (858 aa)
droshaDrosha ribonuclease III. (1207 aa)
tarbp2RISC-loading complex subunit TARBP2; Required for formation of the RNA induced silencing complex (RISC). Component of the RISC loading complex (RLC), also known as the micro-RNA (miRNA) loading complex (miRLC), which is composed of DICER1, AGO2 and TARBP2. Within the RLC/miRLC, DICER1 and TARBP2 are required to process precursor miRNAs (pre-miRNAs) to mature miRNAs and then load them onto AGO2. AGO2 bound to the mature miRNA constitutes the minimal RISC and may subsequently dissociate from DICER1 and TARBP2. May also play a role in the production of short interfering RNAs (siRNAs) from [...] (345 aa)
zc3h7aZinc finger CCCH-type containing 7A. (981 aa)
srrtSerrate RNA effector molecule homolog (Arabidopsis). (756 aa)
srsf3Serine and arginine rich splicing factor 3. (168 aa)
ddx6DEAD (Asp-Glu-Ala-Asp) box helicase 6. (425 aa)
cnot8CCR4-NOT transcription complex, subunit 8. (285 aa)
helzHelicase with zinc finger. (1908 aa)
MOV10Mov10 RISC complex RNA helicase. (1019 aa)
MOV10-2Mov10 RISC complex RNA helicase. (1016 aa)
LOC108441744Lin-28 homolog A (C. elegans). (201 aa)
xpo5Exportin 5. (1217 aa)
cnot10CCR4-NOT transcription complex, subunit 10. (746 aa)
trim71Tripartite motif containing 71, E3 ubiquitin protein ligase. (812 aa)
LIMD1LIM domains containing 1. (599 aa)
ajubaAjuba LIM protein. (695 aa)
ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (164 aa)
tnrc6cTrinucleotide repeat containing adaptor 6C1. (1806 aa)
LOC108430562Protein argonaute-4; Required for RNA-mediated gene silencing (RNAi). Binds to short RNAs such as microRNAs (miRNAs) and represses the translation of mRNAs which are complementary to them. Lacks endonuclease activity and does not appear to cleave target mRNAs; Belongs to the argonaute family. Ago subfamily. (863 aa)
mettl3Methyltransferase like 3; Belongs to the MT-A70-like family. (610 aa)
LOC108424830Trinucleotide repeat containing adaptor 6C2. (1516 aa)
adarAdenosine deaminase RNA specific. (1366 aa)
SNIP1Smad nuclear interacting protein 1. (363 aa)
LOC108424191CCR4-NOT transcription complex, subunit 6b. (566 aa)
vwa2Tudor domain containing 1. (1169 aa)
LIN28BLin-28 homolog B. (247 aa)
cnot1CCR4-NOT transcription complex, subunit 1. (2323 aa)
LOC108413243Argonaute RISC component 1; Belongs to the argonaute family. (796 aa)
henmt1HEN methyltransferase 1. (369 aa)
LOC108444404Uncharacterized protein; Belongs to the DEAD box helicase family. (491 aa)
snd1Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs. (942 aa)
LOC108427590Mov10 RISC complex RNA helicase a. (1004 aa)
eri1Exoribonuclease 1. (340 aa)
zar1Zygote arrest 1. (335 aa)
tdrd9Tudor domain containing 9. (1338 aa)
tnrc6bTrinucleotide repeat containing adaptor 6B. (2048 aa)
LOC108413700Serine and arginine rich splicing factor 3a. (168 aa)
lrrc27Uncharacterized protein. (477 aa)
LOC108437558Lin-28 homolog B (C. elegans). (225 aa)
tnrc6aTrinucleotide repeat containing adaptor 6A. (1773 aa)
nup155Nucleoporin 155. (1391 aa)
fkbp6Peptidylprolyl isomerase. (335 aa)
LOC108433563Lin-28 homolog A. (205 aa)
ENSPNAP00000029845Tudor domain containing 12. (1025 aa)
spout1SPOUT domain containing methyltransferase 1. (380 aa)
dgcr8DGCR8 microprocessor complex subunit. (782 aa)
EIF4ENIF1Eukaryotic translation initiation factor 4E nuclear import factor 1. (964 aa)
MOV10L1Mov10 like RISC complex RNA helicase 1. (1195 aa)
disp2Dispatched homolog 2 (Drosophila). (1481 aa)
cnot6lCCR4-NOT transcription complex, subunit 6-like. (558 aa)
cnot11CCR4-NOT transcription complex, subunit 11. (445 aa)
zar1lZygote arrest 1-like. (311 aa)
LOC108432901CCR4-NOT transcription complex, subunit 7. (286 aa)
dhx9DEAH (Asp-Glu-Ala-His) box helicase 9. (1264 aa)
prkraProtein kinase, interferon-inducible double stranded RNA dependent activator. (273 aa)
cnot9CCR4-NOT transcription complex subunit 9. (297 aa)
TUT4Terminal uridylyl transferase 4. (1495 aa)
LOC108428944DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family. (480 aa)
pum1Pumilio RNA-binding family member 1. (1152 aa)
NCBP1Nuclear cap binding protein subunit 1. (797 aa)
ago2Protein argonaute-2; Required for RNA-mediated gene silencing (RNAi) by the RNA- induced silencing complex (RISC). The 'minimal RISC' appears to include ago2 bound to a short guide RNA such as a microRNA (miRNA) or short interfering RNA (siRNA). These guide RNAs direct RISC to complementary mRNAs that are targets for RISC-mediated gene silencing. The precise mechanism of gene silencing depends on the degree of complementarity between the miRNA or siRNA and its target. Binding of RISC to a perfectly complementary mRNA generally results in silencing due to endonucleolytic cleavage of the [...] (872 aa)
LOC108441023CCR4-NOT transcription complex, subunit 6a. (557 aa)
MARF1Meiosis regulator and mRNA stability factor 1. (1751 aa)
exd1Exonuclease 3'-5' domain containing 1. (482 aa)
LOC108444400Protein argonaute-3; Required for RNA-mediated gene silencing (RNAi). Binds to short RNAs such as microRNAs (miRNAs) and represses the translation of mRNAs which are complementary to them. Lacks endonuclease activity and does not appear to cleave target mRNAs; Belongs to the argonaute family. Ago subfamily. (860 aa)
dicer1Dicer 1, ribonuclease type III; Belongs to the helicase family. Dicer subfamily. (1897 aa)
LOC108413244Protein argonaute-3; Required for RNA-mediated gene silencing (RNAi). Binds to short RNAs such as microRNAs (miRNAs) and represses the translation of mRNAs which are complementary to them. Lacks endonuclease activity and does not appear to cleave target mRNAs; Belongs to the argonaute family. Ago subfamily. (860 aa)
LOC108429335Pumilio RNA-binding family member 2. (1179 aa)
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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