33 items (Pygocentrus nattereri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	tirap	Toll-interleukin 1 receptor (TIR) domain containing adaptor protein. (253 aa)
	ENSPNAP00000002497	Si:dkey-211g8.6; Belongs to the G-protein coupled receptor 1 family. (318 aa)
	LOC108429871	Ig-like domain-containing protein. (327 aa)
	LOC108412438	Toll-like receptor 8a; Belongs to the Toll-like receptor family. (1032 aa)
	LOC108425141	Interleukin-1. (277 aa)
	LOC108425221	Interleukin-1. (277 aa)
	LOC108425220	Interleukin-1. (275 aa)
	ddx58	Uncharacterized protein. (959 aa)
	ENSPNAP00000012490	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family. (61 aa)
	mavs	CARD_2 domain-containing protein. (666 aa)
	f3	Coagulation factor IIIa. (284 aa)
	LOC108442790	Leptin a. (172 aa)
	LOC108410974	Si:ch211-231m23.4; Belongs to the G-protein coupled receptor 1 family. (291 aa)
	ENSPNAP00000019783	Uncharacterized protein. (1024 aa)
	serpine1	Serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1; Belongs to the serpin family. (392 aa)
	ripk1	Receptor (TNFRSF)-interacting serine-threonine kinase 1, like. (680 aa)
	nod1	Nucleotide-binding oligomerization domain containing 1. (937 aa)
	LOC108442743	G_PROTEIN_RECEP_F1_2 domain-containing protein. (325 aa)
	LOC108442750	G_PROTEIN_RECEP_F1_2 domain-containing protein. (309 aa)
	LOC108442749	G_PROTEIN_RECEP_F1_2 domain-containing protein. (325 aa)
	LOC108442747	G_PROTEIN_RECEP_F1_2 domain-containing protein. (310 aa)
	LOC108442742	G_PROTEIN_RECEP_F1_2 domain-containing protein. (325 aa)
	fadd	Fas (tnfrsf6)-associated via death domain. (190 aa)
	il17d	Interleukin 17d. (206 aa)
	tlr7	Toll-like receptor 7; Belongs to the Toll-like receptor family. (1070 aa)
	LOC108415579	Uncharacterized protein. (288 aa)
	f2r	Coagulation factor II (thrombin) receptor. (412 aa)
	TLR5	Toll like receptor 5. (671 aa)
	ddit3	DNA-damage-inducible transcript 3. (279 aa)
	LOC108433501	Uncharacterized protein. (2007 aa)
	LOC108435179	Ig-like domain-containing protein. (511 aa)
	nod2	Nucleotide-binding oligomerization domain containing 2. (983 aa)
	LOC108442748	G_PROTEIN_RECEP_F1_2 domain-containing protein. (325 aa)

Your Current Organism:

Pygocentrus nattereri

NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPNAP00000012490	LOC108425141	ENSPNAP00000012490	ENSPNAP00000004196	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Interleukin-1.	0.732
ENSPNAP00000012490	LOC108425220	ENSPNAP00000012490	ENSPNAP00000005846	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Interleukin-1.	0.732
ENSPNAP00000012490	LOC108425221	ENSPNAP00000012490	ENSPNAP00000005086	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Interleukin-1.	0.732
ENSPNAP00000012490	LOC108442790	ENSPNAP00000012490	ENSPNAP00000016616	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Leptin a.	0.592
ENSPNAP00000012490	TLR5	ENSPNAP00000012490	ENSPNAP00000029761	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Toll like receptor 5.	0.528
ENSPNAP00000012490	fadd	ENSPNAP00000012490	ENSPNAP00000023242	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Fas (tnfrsf6)-associated via death domain.	0.891
ENSPNAP00000012490	ripk1	ENSPNAP00000012490	ENSPNAP00000021559	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.	0.992
ENSPNAP00000012490	serpine1	ENSPNAP00000012490	ENSPNAP00000019855	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1; Belongs to the serpin family.	0.441
ENSPNAP00000019783	mavs	ENSPNAP00000019783	ENSPNAP00000012712	Uncharacterized protein.	CARD_2 domain-containing protein.	0.836
ENSPNAP00000019783	nod1	ENSPNAP00000019783	ENSPNAP00000021733	Uncharacterized protein.	Nucleotide-binding oligomerization domain containing 1.	0.443
LOC108412438	TLR5	ENSPNAP00000004123	ENSPNAP00000029761	Toll-like receptor 8a; Belongs to the Toll-like receptor family.	Toll like receptor 5.	0.536
LOC108412438	ripk1	ENSPNAP00000004123	ENSPNAP00000021559	Toll-like receptor 8a; Belongs to the Toll-like receptor family.	Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.	0.632
LOC108412438	tirap	ENSPNAP00000004123	ENSPNAP00000007753	Toll-like receptor 8a; Belongs to the Toll-like receptor family.	Toll-interleukin 1 receptor (TIR) domain containing adaptor protein.	0.642
LOC108412438	tlr7	ENSPNAP00000004123	ENSPNAP00000025476	Toll-like receptor 8a; Belongs to the Toll-like receptor family.	Toll-like receptor 7; Belongs to the Toll-like receptor family.	0.882
LOC108415579	serpine1	ENSPNAP00000026306	ENSPNAP00000019855	Uncharacterized protein.	Serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1; Belongs to the serpin family.	0.466
LOC108425141	ENSPNAP00000012490	ENSPNAP00000004196	ENSPNAP00000012490	Interleukin-1.	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	0.732
LOC108425220	ENSPNAP00000012490	ENSPNAP00000005846	ENSPNAP00000012490	Interleukin-1.	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	0.732
LOC108425221	ENSPNAP00000012490	ENSPNAP00000005086	ENSPNAP00000012490	Interleukin-1.	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	0.732
LOC108429871	LOC108435179	ENSPNAP00000003055	ENSPNAP00000031500	Ig-like domain-containing protein.	Ig-like domain-containing protein.	0.996
LOC108433501	mavs	ENSPNAP00000031076	ENSPNAP00000012712	Uncharacterized protein.	CARD_2 domain-containing protein.	0.836