32 items (Pygocentrus nattereri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	snu13	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (160 aa)
	prpf8	Pre-mRNA processing factor 8. (2338 aa)
	lsm8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (143 aa)
	snrnp200	Small nuclear ribonucleoprotein 200 (U5). (2068 aa)
	prpf3	PRP3 pre-mRNA processing factor 3 homolog (yeast). (708 aa)
	sart1	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (785 aa)
	eftud2	Elongation factor Tu GTP binding domain containing 2. (971 aa)
	snrpe	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	zmat2	Zinc finger, matrin-type 2. (198 aa)
	prpf6	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (974 aa)
	snrpb	Small nuclear ribonucleoprotein-associated protein. (243 aa)
	lsm4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (134 aa)
	prpf31	PRP31 pre-mRNA processing factor 31 homolog (yeast). (510 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
	usp39	Ubiquitin specific peptidase 39. (520 aa)
	ENSPNAP00000013234	Small nuclear ribonucleoprotein polypeptide F. (85 aa)
	ddx23	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23; Belongs to the DEAD box helicase family. (743 aa)
	lsm3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (103 aa)
	snrpd2	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	lsm2	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
	cunh19orf54	Zgc:153119. (299 aa)
	prpf4	PRP4 pre-mRNA processing factor 4 homolog (yeast). (507 aa)
	LOC108437378	Small nuclear ribonucleoprotein Sm D3. (128 aa)
	lsm7	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (103 aa)
	txnl4b	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
	lsm5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
	ENSPNAP00000028769	Ribosomal_L7Ae domain-containing protein. (109 aa)
	lsm6	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
	txnl4a	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
	prpf18	PRP18 pre-mRNA processing factor 18 homolog (yeast). (351 aa)
	snrnp40	Small nuclear ribonucleoprotein 40 (U5). (347 aa)

Your Current Organism:

Pygocentrus nattereri

NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPNAP00000013234	ENSPNAP00000028769	ENSPNAP00000013234	ENSPNAP00000028769	Small nuclear ribonucleoprotein polypeptide F.	Ribosomal_L7Ae domain-containing protein.	0.969
ENSPNAP00000013234	LOC108437378	ENSPNAP00000013234	ENSPNAP00000024183	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein Sm D3.	0.998
ENSPNAP00000013234	cunh19orf54	ENSPNAP00000013234	ENSPNAP00000021195	Small nuclear ribonucleoprotein polypeptide F.	Zgc:153119.	0.986
ENSPNAP00000013234	ddx23	ENSPNAP00000013234	ENSPNAP00000013346	Small nuclear ribonucleoprotein polypeptide F.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23; Belongs to the DEAD box helicase family.	0.984
ENSPNAP00000013234	eftud2	ENSPNAP00000013234	ENSPNAP00000006389	Small nuclear ribonucleoprotein polypeptide F.	Elongation factor Tu GTP binding domain containing 2.	0.998
ENSPNAP00000013234	lsm2	ENSPNAP00000013234	ENSPNAP00000020841	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
ENSPNAP00000013234	lsm3	ENSPNAP00000013234	ENSPNAP00000017243	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.990
ENSPNAP00000013234	lsm4	ENSPNAP00000013234	ENSPNAP00000010969	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.993
ENSPNAP00000013234	lsm5	ENSPNAP00000013234	ENSPNAP00000026422	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.997
ENSPNAP00000013234	lsm6	ENSPNAP00000013234	ENSPNAP00000031435	Small nuclear ribonucleoprotein polypeptide F.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.990
ENSPNAP00000013234	lsm7	ENSPNAP00000013234	ENSPNAP00000025185	Small nuclear ribonucleoprotein polypeptide F.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.997
ENSPNAP00000013234	lsm8	ENSPNAP00000013234	ENSPNAP00000003820	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.995
ENSPNAP00000013234	prpf18	ENSPNAP00000013234	ENSPNAP00000034088	Small nuclear ribonucleoprotein polypeptide F.	PRP18 pre-mRNA processing factor 18 homolog (yeast).	0.864
ENSPNAP00000013234	prpf3	ENSPNAP00000013234	ENSPNAP00000005240	Small nuclear ribonucleoprotein polypeptide F.	PRP3 pre-mRNA processing factor 3 homolog (yeast).	0.978
ENSPNAP00000013234	prpf31	ENSPNAP00000013234	ENSPNAP00000011837	Small nuclear ribonucleoprotein polypeptide F.	PRP31 pre-mRNA processing factor 31 homolog (yeast).	0.986
ENSPNAP00000013234	prpf4	ENSPNAP00000013234	ENSPNAP00000023580	Small nuclear ribonucleoprotein polypeptide F.	PRP4 pre-mRNA processing factor 4 homolog (yeast).	0.982
ENSPNAP00000013234	prpf6	ENSPNAP00000013234	ENSPNAP00000010060	Small nuclear ribonucleoprotein polypeptide F.	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).	0.997
ENSPNAP00000013234	prpf8	ENSPNAP00000013234	ENSPNAP00000002818	Small nuclear ribonucleoprotein polypeptide F.	Pre-mRNA processing factor 8.	0.998
ENSPNAP00000013234	sart1	ENSPNAP00000013234	ENSPNAP00000006224	Small nuclear ribonucleoprotein polypeptide F.	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	0.995
ENSPNAP00000013234	snrnp200	ENSPNAP00000013234	ENSPNAP00000004468	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein 200 (U5).	0.998