60 items (Pygocentrus nattereri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	znf335	Zinc finger protein 335. (1364 aa)
	vtcn1	V-set domain containing T cell activation inhibitor 1. (271 aa)
	LOC108441202	ZP domain-containing protein. (450 aa)
	LOC108432941	CD40 ligand; Belongs to the tumor necrosis factor family. (256 aa)
	sash3	SAM and SH3 domain containing 3. (383 aa)
	nfatc2	Nuclear factor of activated T cells 2a. (893 aa)
	atad5	ATPase family AAA domain containing 5a. (1816 aa)
	clcf1	Cardiotrophin-like cytokine factor 1. (408 aa)
	ENSPNAP00000036468	Uncharacterized protein. (91 aa)
	ENSPNAP00000036575	ZP domain-containing protein. (450 aa)
	nmbr	Neuromedin B receptor; Belongs to the G-protein coupled receptor 1 family. (381 aa)
	gpam	Glycerol-3-phosphate acyltransferase 1, mitochondrial. (824 aa)
	nck1	Cytoplasmic protein. (380 aa)
	hhla2	HERV-H LTR-associating 2b, tandem duplicate 2. (381 aa)
	dhps	Deoxyhypusine synthase. (360 aa)
	SLC7A1	Solute carrier family 7 member 1. (644 aa)
	mpl	MPL proto-oncogene, thrombopoietin receptor. (634 aa)
	LOC108425141	Interleukin-1. (277 aa)
	LOC108414972	Uncharacterized protein. (284 aa)
	LOC108440165	Uncharacterized protein. (704 aa)
	LOC108412425	Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (545 aa)
	LOC108425221	Interleukin-1. (277 aa)
	tgfbr2	TGF-beta receptor type-2; Transmembrane serine/threonine kinase forming with the TGF- beta type I serine/threonine kinase receptor, TGFBR1, the non- promiscuous receptor for the TGF-beta cytokines TGFB1, TGFB2 and TGFB3. Transduces the TGFB1, TGFB2 and TGFB3 signal from the cell surface to the cytoplasm and is thus regulating a plethora of physiological and pathological processes including cell cycle arrest in epithelial and hematopoietic cells, control of mesenchymal cell proliferation and differentiation, wound healing, extracellular matrix production, immunosuppression and carcinoge [...] (559 aa)
	LOC108425220	Interleukin-1. (275 aa)
	tirap	Toll-interleukin 1 receptor (TIR) domain containing adaptor protein. (253 aa)
	LOC108439652	Tyrosine-protein kinase. (587 aa)
	LOC108426775	Adhesion G protein-coupled receptor G1. (616 aa)
	ENSPNAP00000010441	ZP domain-containing protein. (380 aa)
	ripk2	Receptor-interacting serine/threonine-protein kinase 2; Serine/threonine/tyrosine kinase that plays an essential role in modulation of innate and adaptive immune responses. Upon stimulation by bacterial peptidoglycans, NOD1 and NOD2 are activated, oligomerize and recruit RIPK2 through CARD-CARD domains. (576 aa)
	ENSPNAP00000012724	DC_STAMP domain-containing protein. (440 aa)
	LOC108441223	ZP domain-containing protein. (329 aa)
	il12b	Interleukin-12 subunit beta; Belongs to the type I cytokine receptor family. Type 3 subfamily. (329 aa)
	LOC108426698	ZP domain-containing protein. (640 aa)
	syk	Tyrosine-protein kinase. (611 aa)
	LOC108431693	C-C motif chemokine. (117 aa)
	LOC108425552	Uncharacterized protein. (425 aa)
	il6st	Interleukin 6 signal transducer. (862 aa)
	card11	Caspase recruitment domain family, member 11. (1128 aa)
	LOC108410642	Solute carrier family 7 member 1a. (650 aa)
	LOC108424697	ATPase family AAA domain containing 5b. (734 aa)
	cd276	CD276 molecule. (299 aa)
	LOC108442078	Colony stimulating factor 1b (macrophage). (280 aa)
	fadd	Fas (tnfrsf6)-associated via death domain. (190 aa)
	tnfsf13b	TNF superfamily member 13b; Belongs to the tumor necrosis factor family. (266 aa)
	LOC108437671	Cytoplasmic protein. (382 aa)
	nck2	Cytoplasmic protein. (403 aa)
	LOC108436950	Uncharacterized protein. (492 aa)
	LOC108439251	Insulin-like growth factor 2b. (214 aa)
	LOC108423874	CD28 molecule. (204 aa)
	nmb	Uncharacterized protein. (112 aa)
	LOC108425768	Colony stimulating factor 1a (macrophage). (550 aa)
	PTPRC	Protein tyrosine phosphatase receptor type C. (1204 aa)
	ENSPNAP00000028487	HERV-H LTR-associating 2a, tandem duplicate 2. (389 aa)
	LOC108441853	Neuromedin Bb. (137 aa)
	LOC108413225	Uncharacterized protein. (678 aa)
	il34	Interleukin 34. (206 aa)
	LOC108438546	Insulin-like growth factor 2a. (206 aa)
	ENSPNAP00000030394	Uncharacterized protein. (304 aa)
	LOC108415404	Uncharacterized protein. (1170 aa)
	ocstamp	Osteoclast stimulatory transmembrane protein. (473 aa)

Your Current Organism:

Pygocentrus nattereri

NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPNAP00000028487	cd276	ENSPNAP00000028487	ENSPNAP00000022614	HERV-H LTR-associating 2a, tandem duplicate 2.	CD276 molecule.	0.641
ENSPNAP00000028487	vtcn1	ENSPNAP00000028487	ENSPNAP00000031637	HERV-H LTR-associating 2a, tandem duplicate 2.	V-set domain containing T cell activation inhibitor 1.	0.453
LOC108410642	tirap	ENSPNAP00000019399	ENSPNAP00000007753	Solute carrier family 7 member 1a.	Toll-interleukin 1 receptor (TIR) domain containing adaptor protein.	0.454
LOC108413225	LOC108415404	ENSPNAP00000029094	ENSPNAP00000030850	Uncharacterized protein.	Uncharacterized protein.	0.420
LOC108413225	PTPRC	ENSPNAP00000029094	ENSPNAP00000028145	Uncharacterized protein.	Protein tyrosine phosphatase receptor type C.	0.420
LOC108413225	il6st	ENSPNAP00000029094	ENSPNAP00000015402	Uncharacterized protein.	Interleukin 6 signal transducer.	0.464
LOC108413225	sash3	ENSPNAP00000029094	ENSPNAP00000032835	Uncharacterized protein.	SAM and SH3 domain containing 3.	0.536
LOC108414972	LOC108415404	ENSPNAP00000004351	ENSPNAP00000030850	Uncharacterized protein.	Uncharacterized protein.	0.413
LOC108414972	LOC108432941	ENSPNAP00000004351	ENSPNAP00000032062	Uncharacterized protein.	CD40 ligand; Belongs to the tumor necrosis factor family.	0.685
LOC108414972	PTPRC	ENSPNAP00000004351	ENSPNAP00000028145	Uncharacterized protein.	Protein tyrosine phosphatase receptor type C.	0.413
LOC108415404	LOC108413225	ENSPNAP00000030850	ENSPNAP00000029094	Uncharacterized protein.	Uncharacterized protein.	0.420
LOC108415404	LOC108414972	ENSPNAP00000030850	ENSPNAP00000004351	Uncharacterized protein.	Uncharacterized protein.	0.413
LOC108415404	il12b	ENSPNAP00000030850	ENSPNAP00000013641	Uncharacterized protein.	Interleukin-12 subunit beta; Belongs to the type I cytokine receptor family. Type 3 subfamily.	0.425
LOC108415404	il34	ENSPNAP00000030850	ENSPNAP00000029389	Uncharacterized protein.	Interleukin 34.	0.470
LOC108415404	sash3	ENSPNAP00000030850	ENSPNAP00000032835	Uncharacterized protein.	SAM and SH3 domain containing 3.	0.551
LOC108415404	tnfsf13b	ENSPNAP00000030850	ENSPNAP00000024532	Uncharacterized protein.	TNF superfamily member 13b; Belongs to the tumor necrosis factor family.	0.480
LOC108423874	LOC108425552	ENSPNAP00000025820	ENSPNAP00000014849	CD28 molecule.	Uncharacterized protein.	0.671
LOC108423874	LOC108432941	ENSPNAP00000025820	ENSPNAP00000032062	CD28 molecule.	CD40 ligand; Belongs to the tumor necrosis factor family.	0.713
LOC108423874	cd276	ENSPNAP00000025820	ENSPNAP00000022614	CD28 molecule.	CD276 molecule.	0.621
LOC108425141	LOC108425552	ENSPNAP00000004196	ENSPNAP00000014849	Interleukin-1.	Uncharacterized protein.	0.432