13 items (Pygocentrus nattereri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cwc22	CWC22 spliceosome associated protein homolog. (1384 aa)
	rbm8a	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (174 aa)
	snrnp200	Small nuclear ribonucleoprotein 200 (U5). (2068 aa)
	casc3	Casc3 exon junction complex subunit. (753 aa)
	prpf19	Pre-mRNA processing factor 19. (505 aa)
	shd	Src homology 2 domain containing transforming protein D, a. (395 aa)
	yju2	YJU2 splicing factor homolog. (343 aa)
	cwc25	CWC25 spliceosome associated protein homolog. (397 aa)
	eif4a3	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (406 aa)
	LOC108431508	ISY1 splicing factor homolog. (285 aa)
	LOC108430993	Uncharacterized protein. (422 aa)
	rbm22	RNA binding motif protein 22. (426 aa)
	prpf8	Pre-mRNA processing factor 8. (2338 aa)

Your Current Organism:

Pygocentrus nattereri

NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108430993	LOC108431508	ENSPNAP00000025099	ENSPNAP00000023587	Uncharacterized protein.	ISY1 splicing factor homolog.	0.972
LOC108430993	casc3	ENSPNAP00000025099	ENSPNAP00000010386	Uncharacterized protein.	Casc3 exon junction complex subunit.	0.617
LOC108430993	cwc22	ENSPNAP00000025099	ENSPNAP00000035065	Uncharacterized protein.	CWC22 spliceosome associated protein homolog.	0.912
LOC108430993	cwc25	ENSPNAP00000025099	ENSPNAP00000021567	Uncharacterized protein.	CWC25 spliceosome associated protein homolog.	0.893
LOC108430993	eif4a3	ENSPNAP00000025099	ENSPNAP00000023510	Uncharacterized protein.	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.	0.892
LOC108430993	prpf19	ENSPNAP00000025099	ENSPNAP00000013399	Uncharacterized protein.	Pre-mRNA processing factor 19.	0.907
LOC108430993	prpf8	ENSPNAP00000025099	ENSPNAP00000002818	Uncharacterized protein.	Pre-mRNA processing factor 8.	0.926
LOC108430993	rbm8a	ENSPNAP00000025099	ENSPNAP00000037125	Uncharacterized protein.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.630
LOC108430993	shd	ENSPNAP00000025099	ENSPNAP00000017568	Uncharacterized protein.	Src homology 2 domain containing transforming protein D, a.	0.688
LOC108430993	snrnp200	ENSPNAP00000025099	ENSPNAP00000004468	Uncharacterized protein.	Small nuclear ribonucleoprotein 200 (U5).	0.922
LOC108430993	yju2	ENSPNAP00000025099	ENSPNAP00000017579	Uncharacterized protein.	YJU2 splicing factor homolog.	0.920
LOC108431508	LOC108430993	ENSPNAP00000023587	ENSPNAP00000025099	ISY1 splicing factor homolog.	Uncharacterized protein.	0.972
LOC108431508	casc3	ENSPNAP00000023587	ENSPNAP00000010386	ISY1 splicing factor homolog.	Casc3 exon junction complex subunit.	0.617
LOC108431508	cwc22	ENSPNAP00000023587	ENSPNAP00000035065	ISY1 splicing factor homolog.	CWC22 spliceosome associated protein homolog.	0.964
LOC108431508	cwc25	ENSPNAP00000023587	ENSPNAP00000021567	ISY1 splicing factor homolog.	CWC25 spliceosome associated protein homolog.	0.976
LOC108431508	eif4a3	ENSPNAP00000023587	ENSPNAP00000023510	ISY1 splicing factor homolog.	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.	0.691
LOC108431508	prpf19	ENSPNAP00000023587	ENSPNAP00000013399	ISY1 splicing factor homolog.	Pre-mRNA processing factor 19.	0.999
LOC108431508	prpf8	ENSPNAP00000023587	ENSPNAP00000002818	ISY1 splicing factor homolog.	Pre-mRNA processing factor 8.	0.996
LOC108431508	rbm22	ENSPNAP00000023587	ENSPNAP00000027751	ISY1 splicing factor homolog.	RNA binding motif protein 22.	0.972
LOC108431508	rbm8a	ENSPNAP00000023587	ENSPNAP00000037125	ISY1 splicing factor homolog.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.705