STRINGSTRING
xab2 xab2 snrpd1 snrpd1 ENSPNAP00000013234 ENSPNAP00000013234 prpf19 prpf19 plrg1 plrg1 LOC108413879 LOC108413879 ppie ppie syf2 syf2 dhx34 dhx34 rbm22 rbm22 LOC108430993 LOC108430993 snrpd2 snrpd2 LOC108437378 LOC108437378 cdc40 cdc40 snrnp40 snrnp40 bcas2 bcas2 snw1 snw1 snrpe snrpe eftud2 eftud2 snrpd3 snrpd3 aqr aqr prpf8 prpf8 dhx8 dhx8 cwc22 cwc22 crnkl1 crnkl1 ppil1 ppil1 snrpb snrpb
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
xab2XPA binding protein 2. (847 aa)
snrpd1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
ENSPNAP00000013234Small nuclear ribonucleoprotein polypeptide F. (85 aa)
prpf19Pre-mRNA processing factor 19. (505 aa)
plrg1Pleiotropic regulator 1. (512 aa)
LOC108413879CWC15 spliceosome associated protein homolog. (189 aa)
ppiePeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (302 aa)
syf2SYF2 pre-mRNA-splicing factor. (238 aa)
dhx34DEAH (Asp-Glu-Ala-His) box polypeptide 34. (1150 aa)
rbm22RNA binding motif protein 22. (426 aa)
LOC108430993Uncharacterized protein. (422 aa)
snrpd2Small nuclear ribonucleoprotein Sm D2. (118 aa)
LOC108437378Small nuclear ribonucleoprotein Sm D3. (128 aa)
cdc40Cell division cycle 40 homolog (S. cerevisiae). (578 aa)
snrnp40Small nuclear ribonucleoprotein 40 (U5). (347 aa)
bcas2BCAS2 pre-mRNA processing factor. (225 aa)
snw1SNW domain containing 1. (521 aa)
snrpeSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
eftud2Elongation factor Tu GTP binding domain containing 2. (971 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (143 aa)
aqrAquarius intron-binding spliceosomal factor. (1290 aa)
prpf8Pre-mRNA processing factor 8. (2338 aa)
dhx8DEAH (Asp-Glu-Ala-His) box polypeptide 8. (1210 aa)
cwc22CWC22 spliceosome associated protein homolog. (1384 aa)
crnkl1Crooked neck pre-mRNA splicing factor 1. (746 aa)
ppil1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
snrpbSmall nuclear ribonucleoprotein-associated protein. (243 aa)
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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