STRINGSTRING
prpf19 prpf19 LOC108430993 LOC108430993 lsm7 lsm7 crnkl1 crnkl1 sf3b2 sf3b2 DDX41 DDX41 WDR25 WDR25 ENSPNAP00000027522 ENSPNAP00000027522 gpatch1 gpatch1 rbm22 rbm22 dhx34 dhx34 syf2 syf2 ess2 ess2 pnn pnn hnrnpm hnrnpm ppil2 ppil2 LOC108415889 LOC108415889 ppie ppie cwc22 cwc22 ENSPNAP00000035104 ENSPNAP00000035104 snrnp40 snrnp40 LOC108441668 LOC108441668 sf3a2 sf3a2 rbmx rbmx cdc40 cdc40 ddx23 ddx23 ENSPNAP00000013234 ENSPNAP00000013234 wdr83 wdr83 snrpd1 snrpd1 xab2 xab2 snrpb snrpb ppil1 ppil1 bcas2 bcas2 prpf6 prpf6 LOC108442973 LOC108442973 dhx38 dhx38 snw1 snw1 snrpe snrpe ENSPNAP00000006846 ENSPNAP00000006846 eftud2 eftud2 sart1 sart1 snrnp200 snrnp200 snrpd3 snrpd3 sf3a3 sf3a3 cwc27 cwc27 ppwd1 ppwd1 sf3b1 sf3b1 dhx8 dhx8 aqr aqr prpf8 prpf8 sf3b6 sf3b6 mtrex mtrex lsm2 lsm2 cunh19orf54 cunh19orf54 eif4a3 eif4a3 LOC108431508 LOC108431508 LOC108423543 LOC108423543 prpf4b prpf4b LOC108437378 LOC108437378 ppil3 ppil3 snrpd2 snrpd2 srrm1 srrm1 dhx35 dhx35 lsm3 lsm3 hnrnpr hnrnpr LOC108441675 LOC108441675 snrpg snrpg LOC108413879 LOC108413879 sf3a1 sf3a1 zcchc8 zcchc8 plrg1 plrg1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
prpf19Pre-mRNA processing factor 19. (505 aa)
LOC108430993Uncharacterized protein. (422 aa)
lsm7LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (103 aa)
crnkl1Crooked neck pre-mRNA splicing factor 1. (746 aa)
sf3b2Splicing factor 3b, subunit 2. (882 aa)
DDX41DEAD-box helicase 41. (614 aa)
WDR25WD repeat domain 25. (471 aa)
ENSPNAP00000027522Uncharacterized protein. (128 aa)
gpatch1G patch domain containing 1. (978 aa)
rbm22RNA binding motif protein 22. (426 aa)
dhx34DEAH (Asp-Glu-Ala-His) box polypeptide 34. (1150 aa)
syf2SYF2 pre-mRNA-splicing factor. (238 aa)
ess2Ess-2 splicing factor homolog. (463 aa)
pnnPinin, desmosome associated protein. (684 aa)
hnrnpmHeterogeneous nuclear ribonucleoprotein M. (654 aa)
ppil2Peptidylprolyl isomerase (cyclophilin)-like 2. (525 aa)
LOC108415889Synaptotagmin binding, cytoplasmic RNA interacting protein. (638 aa)
ppiePeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (302 aa)
cwc22CWC22 spliceosome associated protein homolog. (1384 aa)
ENSPNAP00000035104PWI domain-containing protein. (145 aa)
snrnp40Small nuclear ribonucleoprotein 40 (U5). (347 aa)
LOC108441668Protein mago nashi homolog. (147 aa)
sf3a2Splicing factor 3a, subunit 2. (302 aa)
rbmxRNA binding motif protein X-linked. (386 aa)
cdc40Cell division cycle 40 homolog (S. cerevisiae). (578 aa)
ddx23DEAD (Asp-Glu-Ala-Asp) box polypeptide 23; Belongs to the DEAD box helicase family. (743 aa)
ENSPNAP00000013234Small nuclear ribonucleoprotein polypeptide F. (85 aa)
wdr83WD repeat domain containing 83. (318 aa)
snrpd1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
xab2XPA binding protein 2. (847 aa)
snrpbSmall nuclear ribonucleoprotein-associated protein. (243 aa)
ppil1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
bcas2BCAS2 pre-mRNA processing factor. (225 aa)
prpf6PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (974 aa)
LOC108442973Pre-mRNA processing factor 4Bb. (1020 aa)
dhx38DEAH (Asp-Glu-Ala-His) box polypeptide 38. (1237 aa)
snw1SNW domain containing 1. (521 aa)
snrpeSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
ENSPNAP00000006846Uncharacterized protein. (141 aa)
eftud2Elongation factor Tu GTP binding domain containing 2. (971 aa)
sart1Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (785 aa)
snrnp200Small nuclear ribonucleoprotein 200 (U5). (2068 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (143 aa)
sf3a3Splicing factor 3a, subunit 3. (501 aa)
cwc27CWC27 spliceosome associated cyclophilin. (469 aa)
ppwd1Peptidylprolyl isomerase domain and WD repeat containing 1. (685 aa)
sf3b1Splicing factor 3b, subunit 1. (1315 aa)
dhx8DEAH (Asp-Glu-Ala-His) box polypeptide 8. (1210 aa)
aqrAquarius intron-binding spliceosomal factor. (1290 aa)
prpf8Pre-mRNA processing factor 8. (2338 aa)
sf3b6Splicing factor 3b, subunit 6. (125 aa)
mtrexMtr4 exosome RNA helicase. (1037 aa)
lsm2U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
cunh19orf54Zgc:153119. (299 aa)
eif4a3Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (406 aa)
LOC108431508ISY1 splicing factor homolog. (285 aa)
LOC108423543Synaptotagmin binding, cytoplasmic RNA interacting protein, like. (577 aa)
prpf4bPre-mRNA processing factor 4Ba. (998 aa)
LOC108437378Small nuclear ribonucleoprotein Sm D3. (128 aa)
ppil3Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (161 aa)
snrpd2Small nuclear ribonucleoprotein Sm D2. (118 aa)
srrm1Serine/arginine repetitive matrix 1. (748 aa)
dhx35DEAH-box helicase 35. (699 aa)
lsm3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (103 aa)
hnrnprHeterogeneous nuclear ribonucleoprotein R. (632 aa)
LOC108441675Mago homolog, exon junction complex subunit. (147 aa)
snrpgSmall nuclear ribonucleoprotein G. (76 aa)
LOC108413879CWC15 spliceosome associated protein homolog. (189 aa)
sf3a1Splicing factor 3a, subunit 1. (785 aa)
zcchc8Zinc finger, CCHC domain containing 8. (717 aa)
plrg1Pleiotropic regulator 1. (512 aa)
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.