4 items (Pygocentrus nattereri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	lsm11	LSM11, U7 small nuclear RNA associated. (343 aa)
	LOC108437378	Small nuclear ribonucleoprotein Sm D3. (128 aa)
	LSM10	LSM10, U7 small nuclear RNA associated. (120 aa)
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (143 aa)

Your Current Organism:

Pygocentrus nattereri

NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108437378	LSM10	ENSPNAP00000024183	ENSPNAP00000037283	Small nuclear ribonucleoprotein Sm D3.	LSM10, U7 small nuclear RNA associated.	0.991
LOC108437378	lsm11	ENSPNAP00000024183	ENSPNAP00000031670	Small nuclear ribonucleoprotein Sm D3.	LSM11, U7 small nuclear RNA associated.	0.802
LSM10	LOC108437378	ENSPNAP00000037283	ENSPNAP00000024183	LSM10, U7 small nuclear RNA associated.	Small nuclear ribonucleoprotein Sm D3.	0.991
LSM10	lsm11	ENSPNAP00000037283	ENSPNAP00000031670	LSM10, U7 small nuclear RNA associated.	LSM11, U7 small nuclear RNA associated.	0.982
LSM10	snrpd3	ENSPNAP00000037283	ENSPNAP00000004099	LSM10, U7 small nuclear RNA associated.	Small nuclear ribonucleoprotein Sm D3.	0.991
lsm11	LOC108437378	ENSPNAP00000031670	ENSPNAP00000024183	LSM11, U7 small nuclear RNA associated.	Small nuclear ribonucleoprotein Sm D3.	0.802
lsm11	LSM10	ENSPNAP00000031670	ENSPNAP00000037283	LSM11, U7 small nuclear RNA associated.	LSM10, U7 small nuclear RNA associated.	0.982
lsm11	snrpd3	ENSPNAP00000031670	ENSPNAP00000004099	LSM11, U7 small nuclear RNA associated.	Small nuclear ribonucleoprotein Sm D3.	0.802
snrpd3	LSM10	ENSPNAP00000004099	ENSPNAP00000037283	Small nuclear ribonucleoprotein Sm D3.	LSM10, U7 small nuclear RNA associated.	0.991
snrpd3	lsm11	ENSPNAP00000004099	ENSPNAP00000031670	Small nuclear ribonucleoprotein Sm D3.	LSM11, U7 small nuclear RNA associated.	0.802