44 items (Pygocentrus nattereri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	trim44	Tripartite motif containing 44. (334 aa)
	LOC108428699	SAM and SH3 domain containing 1b. (1023 aa)
	LOC108442672	Eukaryotic translation initiation factor 2-alpha kinase 2. (686 aa)
	ENSPNAP00000001042	Uncharacterized protein. (314 aa)
	LOC108425141	Interleukin-1. (277 aa)
	LOC108441667	Si:ch73-185c24.2. (351 aa)
	LOC108425221	Interleukin-1. (277 aa)
	LOC108410814	Programmed cell death 4a. (468 aa)
	LOC108425220	Interleukin-1. (275 aa)
	phb	Prohibitin. (271 aa)
	LOC108433040	Nuclear factor of activated T cells 5b. (1268 aa)
	LOC108428435	Nuclear factor of activated T cells 5a. (1447 aa)
	LOC108433541	Ring finger and CCCH-type domains 2. (1059 aa)
	ilk	Integrin-linked kinase. (452 aa)
	ENSPNAP00000012490	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family. (61 aa)
	pdcd4	Programmed cell death 4b. (470 aa)
	ccdc142	Coiled-coil domain containing 142. (1027 aa)
	ep300	E1A binding protein p300 b. (2622 aa)
	ENSPNAP00000013895	Gremlin 1b. (189 aa)
	LOC108431693	C-C motif chemokine. (117 aa)
	LOC108411615	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family. (248 aa)
	tcim	Transcriptional and immune response regulator a. (102 aa)
	LOC108429496	Ring finger and CCCH-type domains 1a. (1089 aa)
	LOC108412072	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (434 aa)
	ENSPNAP00000019783	Uncharacterized protein. (1024 aa)
	cunh20orf27	Si:ch211-74f19.2. (181 aa)
	LOC108436585	Protein tyrosine phosphatase 4A3b. (173 aa)
	nod1	Nucleotide-binding oligomerization domain containing 1. (937 aa)
	ifi35	Interferon-induced protein 35. (376 aa)
	rbck1	RanBP-type and C3HC4-type zinc finger containing 1. (517 aa)
	sash1	SAM and SH3 domain containing 1a. (1193 aa)
	ENSPNAP00000027867	C1q and TNF related 4. (325 aa)
	LOC108437509	Ring finger and CCCH-type domains 1b. (1114 aa)
	LOC108433501	Uncharacterized protein. (2007 aa)
	LOC108425911	Si:ch211-219a15.3. (370 aa)
	LOC108413510	E1A binding protein p300 a. (2606 aa)
	LOC108431692	Chemokine (C-C motif) ligand 19a, tandem duplicate 2. (102 aa)
	nod2	Nucleotide-binding oligomerization domain containing 2. (983 aa)
	grem1	Gremlin 1a, DAN family BMP antagonist. (169 aa)
	TCIM	Transcriptional and immune response regulator. (106 aa)
	ENSPNAP00000034535	Ectodysplasin A; Belongs to the tumor necrosis factor family. (334 aa)
	ENSPNAP00000034728	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family. (321 aa)
	LOC108431645	Gremlin 2, DAN family BMP antagonist a. (200 aa)
	nmi	Uncharacterized protein. (383 aa)

Your Current Organism:

Pygocentrus nattereri

NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPNAP00000012490	LOC108411615	ENSPNAP00000012490	ENSPNAP00000015885	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	0.607
ENSPNAP00000012490	LOC108425141	ENSPNAP00000012490	ENSPNAP00000004196	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Interleukin-1.	0.732
ENSPNAP00000012490	LOC108425220	ENSPNAP00000012490	ENSPNAP00000005846	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Interleukin-1.	0.732
ENSPNAP00000012490	LOC108425221	ENSPNAP00000012490	ENSPNAP00000005086	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Interleukin-1.	0.732
ENSPNAP00000012490	LOC108431692	ENSPNAP00000012490	ENSPNAP00000032517	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Chemokine (C-C motif) ligand 19a, tandem duplicate 2.	0.451
ENSPNAP00000012490	LOC108431693	ENSPNAP00000012490	ENSPNAP00000014592	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	C-C motif chemokine.	0.426
ENSPNAP00000012490	rbck1	ENSPNAP00000012490	ENSPNAP00000022489	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	RanBP-type and C3HC4-type zinc finger containing 1.	0.950
ENSPNAP00000019783	nod1	ENSPNAP00000019783	ENSPNAP00000021733	Uncharacterized protein.	Nucleotide-binding oligomerization domain containing 1.	0.443
LOC108411615	ENSPNAP00000012490	ENSPNAP00000015885	ENSPNAP00000012490	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	0.607
LOC108412072	ifi35	ENSPNAP00000017336	ENSPNAP00000022453	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Interferon-induced protein 35.	0.480
LOC108413510	ep300	ENSPNAP00000031903	ENSPNAP00000013182	E1A binding protein p300 a.	E1A binding protein p300 b.	0.775
LOC108425141	ENSPNAP00000012490	ENSPNAP00000004196	ENSPNAP00000012490	Interleukin-1.	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	0.732
LOC108425220	ENSPNAP00000012490	ENSPNAP00000005846	ENSPNAP00000012490	Interleukin-1.	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	0.732
LOC108425221	ENSPNAP00000012490	ENSPNAP00000005086	ENSPNAP00000012490	Interleukin-1.	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	0.732
LOC108429496	LOC108433541	ENSPNAP00000016610	ENSPNAP00000011797	Ring finger and CCCH-type domains 1a.	Ring finger and CCCH-type domains 2.	0.671
LOC108431692	ENSPNAP00000012490	ENSPNAP00000032517	ENSPNAP00000012490	Chemokine (C-C motif) ligand 19a, tandem duplicate 2.	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	0.451
LOC108431692	LOC108431693	ENSPNAP00000032517	ENSPNAP00000014592	Chemokine (C-C motif) ligand 19a, tandem duplicate 2.	C-C motif chemokine.	0.892
LOC108431693	ENSPNAP00000012490	ENSPNAP00000014592	ENSPNAP00000012490	C-C motif chemokine.	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	0.426
LOC108431693	LOC108431692	ENSPNAP00000014592	ENSPNAP00000032517	C-C motif chemokine.	Chemokine (C-C motif) ligand 19a, tandem duplicate 2.	0.892
LOC108433501	nod1	ENSPNAP00000031076	ENSPNAP00000021733	Uncharacterized protein.	Nucleotide-binding oligomerization domain containing 1.	0.443