110 items (Pygocentrus nattereri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	zmat5	Zinc finger, matrin-type 5. (174 aa)
	aqr	Aquarius intron-binding spliceosomal factor. (1290 aa)
	mtrex	Mtr4 exosome RNA helicase. (1037 aa)
	SRRM3	Serine/arginine repetitive matrix 3. (638 aa)
	ppwd1	Peptidylprolyl isomerase domain and WD repeat containing 1. (685 aa)
	cwc27	CWC27 spliceosome associated cyclophilin. (469 aa)
	sf3a3	Splicing factor 3a, subunit 3. (501 aa)
	dhx15	DEAH (Asp-Glu-Ala-His) box helicase 15. (764 aa)
	srrm4	Serine/arginine repetitive matrix 4. (587 aa)
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (143 aa)
	wbp4	Uncharacterized protein. (286 aa)
	snrnp200	Small nuclear ribonucleoprotein 200 (U5). (2068 aa)
	LOC108411937	Zgc:158803. (361 aa)
	prpf38b	Uncharacterized protein. (507 aa)
	snrnp70	Small nuclear ribonucleoprotein 70 (U1). (453 aa)
	xab2	XPA binding protein 2. (847 aa)
	ppil1	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
	bcas2	BCAS2 pre-mRNA processing factor. (225 aa)
	rbm41	RNA binding motif protein 41. (446 aa)
	sf3b3	Splicing factor 3b, subunit 3. (1217 aa)
	tfip11	Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family. (835 aa)
	ENSPNAP00000009837	Uncharacterized protein. (79 aa)
	LOC108442973	Pre-mRNA processing factor 4Bb. (1020 aa)
	hnrnpm	Heterogeneous nuclear ribonucleoprotein M. (654 aa)
	ENSPNAP00000006846	Uncharacterized protein. (141 aa)
	eftud2	Elongation factor Tu GTP binding domain containing 2. (971 aa)
	efl1	Elongation factor like GTPase 1. (1134 aa)
	cactin	Cactin. (879 aa)
	rbm8a	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (174 aa)
	mthfsd	Methenyltetrahydrofolate synthetase domain containing. (439 aa)
	sf3a2	Splicing factor 3a, subunit 2. (302 aa)
	ctnnbl1	Catenin, beta like 1. (560 aa)
	snrnp40	Small nuclear ribonucleoprotein 40 (U5). (347 aa)
	ENSPNAP00000035104	PWI domain-containing protein. (145 aa)
	cwc22	CWC22 spliceosome associated protein homolog. (1384 aa)
	ppie	Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (302 aa)
	luc7l3	LUC7-like 3 pre-mRNA splicing factor. (461 aa)
	prpf18	PRP18 pre-mRNA processing factor 18 homolog (yeast). (351 aa)
	mfap1	Microfibril associated protein 1. (440 aa)
	zmat2	Zinc finger, matrin-type 2. (198 aa)
	dhx38	DEAH (Asp-Glu-Ala-His) box polypeptide 38. (1237 aa)
	ube2j1	Ubiquitin-conjugating enzyme E2, J1. (326 aa)
	LOC108442464	SMU1 DNA replication regulator and spliceosomal factor a. (513 aa)
	snw1	SNW domain containing 1. (521 aa)
	LOC108435868	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (466 aa)
	LOC108437489	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (463 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
	cwf19l1	CWF19 like cell cycle control factor 1. (551 aa)
	LOC108431794	SMU1 DNA replication regulator and spliceosomal factor b. (539 aa)
	wdr83	WD repeat domain containing 83. (318 aa)
	ccdc130	Coiled-coil domain containing 130. (404 aa)
	ENSPNAP00000013072	Cwf21 domain-containing protein. (207 aa)
	ENSPNAP00000013234	Small nuclear ribonucleoprotein polypeptide F. (85 aa)
	ddx23	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23; Belongs to the DEAD box helicase family. (743 aa)
	rbmx	RNA binding motif protein X-linked. (386 aa)
	prpf39	PRP39 pre-mRNA processing factor 39 homolog (yeast). (779 aa)
	snrnp35	Small nuclear ribonucleoprotein 35 (U11/U12). (258 aa)
	ik	IK cytokine. (546 aa)
	ENSPNAP00000016009	Uncharacterized protein. (108 aa)
	CWF19L2	CWF19 like cell cycle control factor 2. (801 aa)
	sf3a1	Splicing factor 3a, subunit 1. (785 aa)
	LOC108413879	CWC15 spliceosome associated protein homolog. (189 aa)
	gcfc2	GC-rich sequence DNA-binding factor 2. (816 aa)
	snrnp48	Small nuclear ribonucleoprotein 48 (U11/U12). (340 aa)
	bud31	BUD31 homolog. (144 aa)
	LOC108418277	Si:ch211-114c17.1. (723 aa)
	aar2	AAR2 splicing factor. (386 aa)
	dhx35	DEAH-box helicase 35. (699 aa)
	shd	Src homology 2 domain containing transforming protein D, a. (395 aa)
	yju2	YJU2 splicing factor homolog. (343 aa)
	zcrb1	Zinc finger CCHC-type and RNA binding motif 1. (218 aa)
	srrm1	Serine/arginine repetitive matrix 1. (748 aa)
	upf1	UPF1 RNA helicase and ATPase. (1100 aa)
	paxbp1	PAX3 and PAX7 binding protein 1. (890 aa)
	uhrf1bp1	UHRF1 binding protein 1. (1340 aa)
	ppil3	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (161 aa)
	myef2	Myelin expression factor 2. (474 aa)
	LOC108439900	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (463 aa)
	adar	Adenosine deaminase RNA specific. (1366 aa)
	SNIP1	Smad nuclear interacting protein 1. (363 aa)
	ccdc12	Coiled-coil domain containing 12. (150 aa)
	cwc25	CWC25 spliceosome associated protein homolog. (397 aa)
	slu7	SLU7 homolog, splicing factor. (563 aa)
	rnpc3	RNA-binding region (RNP1, RRM) containing 3. (515 aa)
	eif4a3	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (406 aa)
	sf3b4	Splicing factor 3b, subunit 4. (392 aa)
	LOC108431508	ISY1 splicing factor homolog. (285 aa)
	gpkow	G patch domain and KOW motifs. (522 aa)
	prpf4b	Pre-mRNA processing factor 4Ba. (998 aa)
	LOC108437378	Small nuclear ribonucleoprotein Sm D3. (128 aa)
	cdc40	Cell division cycle 40 homolog (S. cerevisiae). (578 aa)
	LOC108430993	Uncharacterized protein. (422 aa)
	prpf38a	Pre-mRNA processing factor 38A. (313 aa)
	crnkl1	Crooked neck pre-mRNA splicing factor 1. (746 aa)
	sf3b2	Splicing factor 3b, subunit 2. (882 aa)
	snrnp25	Small nuclear ribonucleoprotein 25. (179 aa)
	DDX41	DEAD-box helicase 41. (614 aa)
	snrpc	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (158 aa)
	WDR25	WD repeat domain 25. (471 aa)
	ENSPNAP00000027522	Uncharacterized protein. (128 aa)
	sf1	Splicing factor 1. (664 aa)
	gpatch1	G patch domain containing 1. (978 aa)
	rbm22	RNA binding motif protein 22. (426 aa)
	ENSPNAP00000028084	Uncharacterized protein. (120 aa)
	syf2	SYF2 pre-mRNA-splicing factor. (238 aa)
	rbmx2	RRM domain-containing protein. (396 aa)
	ess2	Ess-2 splicing factor homolog. (463 aa)
	rnf113a	Ring finger protein 113A. (321 aa)
	dhx16	DEAH (Asp-Glu-Ala-His) box polypeptide 16. (1055 aa)
	prpf40a	PRP40 pre-mRNA processing factor 40 homolog A. (843 aa)

Your Current Organism:

Pygocentrus nattereri

NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CWF19L2	ENSPNAP00000013072	ENSPNAP00000016016	ENSPNAP00000013072	CWF19 like cell cycle control factor 2.	Cwf21 domain-containing protein.	0.484
CWF19L2	ENSPNAP00000013234	ENSPNAP00000016016	ENSPNAP00000013234	CWF19 like cell cycle control factor 2.	Small nuclear ribonucleoprotein polypeptide F.	0.878
CWF19L2	ENSPNAP00000016009	ENSPNAP00000016016	ENSPNAP00000016009	CWF19 like cell cycle control factor 2.	Uncharacterized protein.	0.899
CWF19L2	ENSPNAP00000035104	ENSPNAP00000016016	ENSPNAP00000035104	CWF19 like cell cycle control factor 2.	PWI domain-containing protein.	0.408
CWF19L2	LOC108413879	ENSPNAP00000016016	ENSPNAP00000016237	CWF19 like cell cycle control factor 2.	CWC15 spliceosome associated protein homolog.	0.859
CWF19L2	LOC108430993	ENSPNAP00000016016	ENSPNAP00000025099	CWF19 like cell cycle control factor 2.	Uncharacterized protein.	0.788
CWF19L2	LOC108437378	ENSPNAP00000016016	ENSPNAP00000024183	CWF19 like cell cycle control factor 2.	Small nuclear ribonucleoprotein Sm D3.	0.787
CWF19L2	WDR25	ENSPNAP00000016016	ENSPNAP00000027481	CWF19 like cell cycle control factor 2.	WD repeat domain 25.	0.950
CWF19L2	aqr	ENSPNAP00000016016	ENSPNAP00000002265	CWF19 like cell cycle control factor 2.	Aquarius intron-binding spliceosomal factor.	0.875
CWF19L2	bcas2	ENSPNAP00000016016	ENSPNAP00000010195	CWF19 like cell cycle control factor 2.	BCAS2 pre-mRNA processing factor.	0.875
CWF19L2	bud31	ENSPNAP00000016016	ENSPNAP00000016651	CWF19 like cell cycle control factor 2.	BUD31 homolog.	0.886
CWF19L2	ccdc12	ENSPNAP00000016016	ENSPNAP00000021384	CWF19 like cell cycle control factor 2.	Coiled-coil domain containing 12.	0.729
CWF19L2	cdc40	ENSPNAP00000016016	ENSPNAP00000024369	CWF19 like cell cycle control factor 2.	Cell division cycle 40 homolog (S. cerevisiae).	0.973
CWF19L2	crnkl1	ENSPNAP00000016016	ENSPNAP00000025775	CWF19 like cell cycle control factor 2.	Crooked neck pre-mRNA splicing factor 1.	0.866
CWF19L2	cwc22	ENSPNAP00000016016	ENSPNAP00000035065	CWF19 like cell cycle control factor 2.	CWC22 spliceosome associated protein homolog.	0.526
CWF19L2	cwc27	ENSPNAP00000016016	ENSPNAP00000003768	CWF19 like cell cycle control factor 2.	CWC27 spliceosome associated cyclophilin.	0.626
CWF19L2	dhx15	ENSPNAP00000016016	ENSPNAP00000003860	CWF19 like cell cycle control factor 2.	DEAH (Asp-Glu-Ala-His) box helicase 15.	0.868
CWF19L2	dhx16	ENSPNAP00000016016	ENSPNAP00000030954	CWF19 like cell cycle control factor 2.	DEAH (Asp-Glu-Ala-His) box polypeptide 16.	0.525
CWF19L2	dhx35	ENSPNAP00000016016	ENSPNAP00000017259	CWF19 like cell cycle control factor 2.	DEAH-box helicase 35.	0.467
CWF19L2	dhx38	ENSPNAP00000016016	ENSPNAP00000007878	CWF19 like cell cycle control factor 2.	DEAH (Asp-Glu-Ala-His) box polypeptide 38.	0.679