49 items (Pygocentrus nattereri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cwc22	CWC22 spliceosome associated protein homolog. (1384 aa)
	aqr	Aquarius intron-binding spliceosomal factor. (1290 aa)
	cwc27	CWC27 spliceosome associated cyclophilin. (469 aa)
	srrm4	Serine/arginine repetitive matrix 4. (587 aa)
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (143 aa)
	wbp4	Uncharacterized protein. (286 aa)
	snrnp200	Small nuclear ribonucleoprotein 200 (U5). (2068 aa)
	efl1	Elongation factor like GTPase 1. (1134 aa)
	eftud2	Elongation factor Tu GTP binding domain containing 2. (971 aa)
	LOC108435868	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (466 aa)
	snw1	SNW domain containing 1. (521 aa)
	LOC108442464	SMU1 DNA replication regulator and spliceosomal factor a. (513 aa)
	zmat2	Zinc finger, matrin-type 2. (198 aa)
	tfip11	Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family. (835 aa)
	sf3b3	Splicing factor 3b, subunit 3. (1217 aa)
	bcas2	BCAS2 pre-mRNA processing factor. (225 aa)
	ppil1	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
	LOC108437489	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (463 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
	LOC108431794	SMU1 DNA replication regulator and spliceosomal factor b. (539 aa)
	ENSPNAP00000013072	Cwf21 domain-containing protein. (207 aa)
	prpf39	PRP39 pre-mRNA processing factor 39 homolog (yeast). (779 aa)
	ik	IK cytokine. (546 aa)
	sf3a2	Splicing factor 3a, subunit 2. (302 aa)
	LOC108413879	CWC15 spliceosome associated protein homolog. (189 aa)
	gcfc2	GC-rich sequence DNA-binding factor 2. (816 aa)
	LOC108418277	Si:ch211-114c17.1. (723 aa)
	shd	Src homology 2 domain containing transforming protein D, a. (395 aa)
	yju2	YJU2 splicing factor homolog. (343 aa)
	paxbp1	PAX3 and PAX7 binding protein 1. (890 aa)
	LOC108439900	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (463 aa)
	SNIP1	Smad nuclear interacting protein 1. (363 aa)
	cwc25	CWC25 spliceosome associated protein homolog. (397 aa)
	eif4a3	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (406 aa)
	rbm8a	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (174 aa)
	LOC108437378	Small nuclear ribonucleoprotein Sm D3. (128 aa)
	LOC108430993	Uncharacterized protein. (422 aa)
	prpf38a	Pre-mRNA processing factor 38A. (313 aa)
	snrpc	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (158 aa)
	rbm22	RNA binding motif protein 22. (426 aa)
	syf2	SYF2 pre-mRNA-splicing factor. (238 aa)
	rbmx2	RRM domain-containing protein. (396 aa)
	rnf113a	Ring finger protein 113A. (321 aa)
	dhx16	DEAH (Asp-Glu-Ala-His) box polypeptide 16. (1055 aa)
	uhrf1bp1	UHRF1 binding protein 1. (1340 aa)
	snrnp40	Small nuclear ribonucleoprotein 40 (U5). (347 aa)
	mfap1	Microfibril associated protein 1. (440 aa)
	prpf18	PRP18 pre-mRNA processing factor 18 homolog (yeast). (351 aa)
	ppie	Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (302 aa)

Your Current Organism:

Pygocentrus nattereri

NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPNAP00000013072	LOC108413879	ENSPNAP00000013072	ENSPNAP00000016237	Cwf21 domain-containing protein.	CWC15 spliceosome associated protein homolog.	0.925
ENSPNAP00000013072	LOC108430993	ENSPNAP00000013072	ENSPNAP00000025099	Cwf21 domain-containing protein.	Uncharacterized protein.	0.851
ENSPNAP00000013072	LOC108437378	ENSPNAP00000013072	ENSPNAP00000024183	Cwf21 domain-containing protein.	Small nuclear ribonucleoprotein Sm D3.	0.913
ENSPNAP00000013072	SNIP1	ENSPNAP00000013072	ENSPNAP00000020634	Cwf21 domain-containing protein.	Smad nuclear interacting protein 1.	0.893
ENSPNAP00000013072	aqr	ENSPNAP00000013072	ENSPNAP00000002265	Cwf21 domain-containing protein.	Aquarius intron-binding spliceosomal factor.	0.845
ENSPNAP00000013072	bcas2	ENSPNAP00000013072	ENSPNAP00000010195	Cwf21 domain-containing protein.	BCAS2 pre-mRNA processing factor.	0.628
ENSPNAP00000013072	cwc22	ENSPNAP00000013072	ENSPNAP00000035065	Cwf21 domain-containing protein.	CWC22 spliceosome associated protein homolog.	0.981
ENSPNAP00000013072	cwc25	ENSPNAP00000013072	ENSPNAP00000021567	Cwf21 domain-containing protein.	CWC25 spliceosome associated protein homolog.	0.974
ENSPNAP00000013072	cwc27	ENSPNAP00000013072	ENSPNAP00000003768	Cwf21 domain-containing protein.	CWC27 spliceosome associated cyclophilin.	0.917
ENSPNAP00000013072	dhx16	ENSPNAP00000013072	ENSPNAP00000030954	Cwf21 domain-containing protein.	DEAH (Asp-Glu-Ala-His) box polypeptide 16.	0.918
ENSPNAP00000013072	efl1	ENSPNAP00000013072	ENSPNAP00000005979	Cwf21 domain-containing protein.	Elongation factor like GTPase 1.	0.661
ENSPNAP00000013072	eftud2	ENSPNAP00000013072	ENSPNAP00000006389	Cwf21 domain-containing protein.	Elongation factor Tu GTP binding domain containing 2.	0.950
ENSPNAP00000013072	eif4a3	ENSPNAP00000013072	ENSPNAP00000023510	Cwf21 domain-containing protein.	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.	0.888
ENSPNAP00000013072	ik	ENSPNAP00000013072	ENSPNAP00000014997	Cwf21 domain-containing protein.	IK cytokine.	0.683
ENSPNAP00000013072	mfap1	ENSPNAP00000013072	ENSPNAP00000033528	Cwf21 domain-containing protein.	Microfibril associated protein 1.	0.757
ENSPNAP00000013072	ppie	ENSPNAP00000013072	ENSPNAP00000034801	Cwf21 domain-containing protein.	Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily.	0.753
ENSPNAP00000013072	ppil1	ENSPNAP00000013072	ENSPNAP00000010497	Cwf21 domain-containing protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.878
ENSPNAP00000013072	prpf18	ENSPNAP00000013072	ENSPNAP00000034088	Cwf21 domain-containing protein.	PRP18 pre-mRNA processing factor 18 homolog (yeast).	0.731
ENSPNAP00000013072	prpf38a	ENSPNAP00000013072	ENSPNAP00000025369	Cwf21 domain-containing protein.	Pre-mRNA processing factor 38A.	0.749
ENSPNAP00000013072	rbm22	ENSPNAP00000013072	ENSPNAP00000027751	Cwf21 domain-containing protein.	RNA binding motif protein 22.	0.851