81 items (Pygocentrus nattereri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nono	Non-POU domain containing, octamer-binding. (500 aa)
	LOC108410804	Terminal uridylyl transferase 1, U6 snRNA-specific. (787 aa)
	rbm25	RNA binding motif protein 25b. (815 aa)
	srsf11	Serine and arginine rich splicing factor 11. (461 aa)
	LOC108434864	RNA binding motif protein 4.3. (354 aa)
	LOC108442464	SMU1 DNA replication regulator and spliceosomal factor a. (513 aa)
	nsrp1	Nuclear speckle splicing regulatory protein 1. (472 aa)
	LOC108439109	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab. (427 aa)
	fam76b	Family with sequence similarity 76 member B. (323 aa)
	LOC108431323	Serine and arginine rich splicing factor 1b. (241 aa)
	alkbh5	AlkB homolog 5, RNA demethylase. (360 aa)
	nrde2	NRDE-2, necessary for RNA interference, domain containing. (1084 aa)
	dusp11	Dual specificity phosphatase 11 (RNA/RNP complex 1-interacting). (323 aa)
	msl1	MSL complex subunit 1a. (507 aa)
	fyttd1	Uncharacterized protein. (335 aa)
	zc3h18	Zinc finger CCCH-type containing 18. (1097 aa)
	ENSPNAP00000011659	Uncharacterized protein. (148 aa)
	LOC108431794	SMU1 DNA replication regulator and spliceosomal factor b. (539 aa)
	LOC108436873	RRM domain-containing protein. (443 aa)
	ENSPNAP00000014024	Serine and arginine rich splicing factor 10b. (198 aa)
	hspb3	Heat shock protein, alpha-crystallin-related, b3; Belongs to the small heat shock protein (HSP20) family. (147 aa)
	LOC108411053	Serine and arginine rich splicing factor 5a. (280 aa)
	zc3h14	Zinc finger CCCH-type containing 14. (672 aa)
	tcim	Transcriptional and immune response regulator a. (102 aa)
	csnk1a1	Casein kinase 1, alpha 1; Belongs to the protein kinase superfamily. (372 aa)
	ENSPNAP00000016959	Serine and arginine rich splicing factor 6a. (243 aa)
	glis2	GLIS family zinc finger 2b. (493 aa)
	LOC108442882	Serine and arginine rich splicing factor 4. (322 aa)
	srpk3	SRSF protein kinase 3. (702 aa)
	fto	FTO alpha-ketoglutarate dependent dioxygenase. (590 aa)
	ENSPNAP00000018906	RNA binding motif protein 15B. (400 aa)
	mettl3	Methyltransferase like 3; Belongs to the MT-A70-like family. (610 aa)
	fastk	Fas-activated serine/threonine kinase. (918 aa)
	LOC108414068	Uncharacterized protein. (431 aa)
	rbm15	RNA binding motif protein 15. (858 aa)
	ENSPNAP00000024332	Arginine/serine-rich coiled-coil 1. (283 aa)
	ENSPNAP00000024600	RNA binding motif protein 11. (91 aa)
	ENSPNAP00000024775	RRM domain-containing protein. (66 aa)
	LOC108436634	Zgc:103482. (351 aa)
	LOC108430244	Serine and arginine rich splicing factor 2a. (220 aa)
	zc3h13	Zinc finger CCCH-type containing 13. (1811 aa)
	wbp11	Uncharacterized protein. (679 aa)
	LOC108433121	Uncharacterized protein. (1398 aa)
	LOC108436365	SRSF protein kinase 1b. (669 aa)
	scnm1	Sodium channel modifier 1. (261 aa)
	LOC108413700	Serine and arginine rich splicing factor 3a. (168 aa)
	DGKQ	Diacylglycerol kinase. (924 aa)
	noc3l	Nucleolar complex protein 3 homolog. (800 aa)
	dhx36	DEAH (Asp-Glu-Ala-His) box polypeptide 36. (1030 aa)
	pnisr	PNN-interacting serine/arginine-rich protein. (803 aa)
	srpk1	SRSF protein kinase 1a. (722 aa)
	ZNF830	Zinc finger protein 830. (336 aa)
	LOC108432886	Inositol polyphosphate phosphatase-like 1b. (1197 aa)
	ENSPNAP00000032160	RRM domain-containing protein. (90 aa)
	akap17a	A kinase (PRKA) anchor protein 17A. (642 aa)
	wt1	WT1 transcription factor b. (405 aa)
	LOC108428310	Brain abundant, membrane attached signal protein 1. (204 aa)
	apex1	DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. (318 aa)
	wtap	WT1 associated protein. (429 aa)
	LOC108415197	Serine and arginine rich splicing factor 1a. (244 aa)
	LOC108428188	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Aa. (427 aa)
	poldip3	Polymerase (DNA-directed), delta interacting protein 3. (479 aa)
	ENSPNAP00000034100	Serine and arginine rich splicing factor 6a. (130 aa)
	TCIM	Transcriptional and immune response regulator. (106 aa)
	cpsf6	Cleavage and polyadenylation specific factor 6. (548 aa)
	NR3C1	Nuclear receptor subfamily 3 group C member 1. (752 aa)
	ddx39b	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B. (436 aa)
	srek1	Splicing regulatory glutamine/lysine-rich protein 1. (518 aa)
	ythdc1	YTH domain containing 1. (717 aa)
	rad54l2	RAD54 like 2. (1413 aa)
	DDX5	DEAD-box helicase 5; Belongs to the DEAD box helicase family. (619 aa)
	LOC108424762	DEAD-box helicase 17; Belongs to the DEAD box helicase family. (664 aa)
	LOC108432077	DEAD (Asp-Glu-Ala-Asp) box helicase 5; Belongs to the DEAD box helicase family. (623 aa)
	sarnp	SAP domain containing ribonucleoprotein. (208 aa)
	SRSF10	Serine and arginine rich splicing factor 10. (212 aa)
	son	Uncharacterized protein. (1157 aa)
	LOC108413264	WT1 transcription factor a. (414 aa)
	srsf3	Serine and arginine rich splicing factor 3. (168 aa)
	LOC108430977	Nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor). (785 aa)
	wbp4	Uncharacterized protein. (286 aa)
	srsf5	Serine and arginine rich splicing factor 5b. (260 aa)

Your Current Organism:

Pygocentrus nattereri

NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX5	ENSPNAP00000016959	ENSPNAP00000037556	ENSPNAP00000016959	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	Serine and arginine rich splicing factor 6a.	0.429
DDX5	ENSPNAP00000034100	ENSPNAP00000037556	ENSPNAP00000034100	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	Serine and arginine rich splicing factor 6a.	0.429
DDX5	LOC108411053	ENSPNAP00000037556	ENSPNAP00000015280	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	Serine and arginine rich splicing factor 5a.	0.429
DDX5	LOC108413700	ENSPNAP00000037556	ENSPNAP00000026905	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	Serine and arginine rich splicing factor 3a.	0.409
DDX5	LOC108428188	ENSPNAP00000037556	ENSPNAP00000033767	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Aa.	0.654
DDX5	LOC108430244	ENSPNAP00000037556	ENSPNAP00000025409	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	Serine and arginine rich splicing factor 2a.	0.483
DDX5	LOC108431794	ENSPNAP00000037556	ENSPNAP00000012237	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	SMU1 DNA replication regulator and spliceosomal factor b.	0.631
DDX5	LOC108432077	ENSPNAP00000037556	ENSPNAP00000001583	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	DEAD (Asp-Glu-Ala-Asp) box helicase 5; Belongs to the DEAD box helicase family.	0.882
DDX5	LOC108439109	ENSPNAP00000037556	ENSPNAP00000008651	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab.	0.655
DDX5	LOC108442464	ENSPNAP00000037556	ENSPNAP00000007650	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	SMU1 DNA replication regulator and spliceosomal factor a.	0.631
DDX5	LOC108442882	ENSPNAP00000037556	ENSPNAP00000017561	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	Serine and arginine rich splicing factor 4.	0.429
DDX5	ddx39b	ENSPNAP00000037556	ENSPNAP00000036253	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B.	0.657
DDX5	dhx36	ENSPNAP00000037556	ENSPNAP00000028300	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	DEAH (Asp-Glu-Ala-His) box polypeptide 36.	0.514
DDX5	noc3l	ENSPNAP00000037556	ENSPNAP00000027378	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	Nucleolar complex protein 3 homolog.	0.699
DDX5	poldip3	ENSPNAP00000037556	ENSPNAP00000034065	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	Polymerase (DNA-directed), delta interacting protein 3.	0.781
DDX5	rbm25	ENSPNAP00000037556	ENSPNAP00000005933	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	RNA binding motif protein 25b.	0.739
DDX5	sarnp	ENSPNAP00000037556	ENSPNAP00000001868	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	SAP domain containing ribonucleoprotein.	0.640
DDX5	son	ENSPNAP00000037556	ENSPNAP00000003584	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.490
DDX5	srsf3	ENSPNAP00000037556	ENSPNAP00000003989	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	Serine and arginine rich splicing factor 3.	0.409
DDX5	srsf5	ENSPNAP00000037556	ENSPNAP00000004908	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	Serine and arginine rich splicing factor 5b.	0.429