39 items (Pygocentrus nattereri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	lsm6	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
	txnl4a	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
	prpf18	PRP18 pre-mRNA processing factor 18 homolog (yeast). (351 aa)
	lsm5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
	sf3b2	Splicing factor 3b, subunit 2. (882 aa)
	txnl4b	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
	lsm7	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (103 aa)
	LOC108437378	Small nuclear ribonucleoprotein Sm D3. (128 aa)
	prpf4	PRP4 pre-mRNA processing factor 4 homolog (yeast). (507 aa)
	rnpc3	RNA-binding region (RNP1, RRM) containing 3. (515 aa)
	sf3b5	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
	snrpa	Small nuclear ribonucleoprotein polypeptide A. (281 aa)
	cunh19orf54	Zgc:153119. (299 aa)
	inpp5d	Inositol polyphosphate-5-phosphatase D. (1110 aa)
	lsm2	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
	snrpd2	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	lsm3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (103 aa)
	snrpg	Small nuclear ribonucleoprotein G. (76 aa)
	trmt13	tRNA methyltransferase 13 homolog. (463 aa)
	snrpb2	Small nuclear ribonucleoprotein polypeptide B2. (219 aa)
	ddx23	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23; Belongs to the DEAD box helicase family. (743 aa)
	usp39	Ubiquitin specific peptidase 39. (520 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
	ppih	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (177 aa)
	lsm4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (134 aa)
	snrpb	Small nuclear ribonucleoprotein-associated protein. (243 aa)
	prpf6	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (974 aa)
	KIAA2026	Bromo domain-containing protein. (1470 aa)
	cd2bp2	CD2 (cytoplasmic tail) binding protein 2. (380 aa)
	snrpe	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	sart1	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (785 aa)
	prpf3	PRP3 pre-mRNA processing factor 3 homolog (yeast). (708 aa)
	snrnp200	Small nuclear ribonucleoprotein 200 (U5). (2068 aa)
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (143 aa)
	lsm8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	prpf8	Pre-mRNA processing factor 8. (2338 aa)
	sf3b1	Splicing factor 3b, subunit 1. (1315 aa)
	htatsf1	HIV-1 Tat specific factor 1. (464 aa)
	rbmx2	RRM domain-containing protein. (396 aa)

Your Current Organism:

Pygocentrus nattereri

NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108437378	cunh19orf54	ENSPNAP00000024183	ENSPNAP00000021195	Small nuclear ribonucleoprotein Sm D3.	Zgc:153119.	0.951
LOC108437378	ddx23	ENSPNAP00000024183	ENSPNAP00000013346	Small nuclear ribonucleoprotein Sm D3.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23; Belongs to the DEAD box helicase family.	0.969
LOC108437378	htatsf1	ENSPNAP00000024183	ENSPNAP00000037167	Small nuclear ribonucleoprotein Sm D3.	HIV-1 Tat specific factor 1.	0.629
LOC108437378	lsm2	ENSPNAP00000024183	ENSPNAP00000020841	Small nuclear ribonucleoprotein Sm D3.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.968
LOC108437378	lsm3	ENSPNAP00000024183	ENSPNAP00000017243	Small nuclear ribonucleoprotein Sm D3.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.969
LOC108437378	lsm4	ENSPNAP00000024183	ENSPNAP00000010969	Small nuclear ribonucleoprotein Sm D3.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.981
LOC108437378	lsm5	ENSPNAP00000024183	ENSPNAP00000026422	Small nuclear ribonucleoprotein Sm D3.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.974
LOC108437378	lsm6	ENSPNAP00000024183	ENSPNAP00000031435	Small nuclear ribonucleoprotein Sm D3.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.979
LOC108437378	lsm7	ENSPNAP00000024183	ENSPNAP00000025185	Small nuclear ribonucleoprotein Sm D3.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.981
LOC108437378	lsm8	ENSPNAP00000024183	ENSPNAP00000003820	Small nuclear ribonucleoprotein Sm D3.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.977
LOC108437378	ppih	ENSPNAP00000024183	ENSPNAP00000037297	Small nuclear ribonucleoprotein Sm D3.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.884
LOC108437378	prpf18	ENSPNAP00000024183	ENSPNAP00000034088	Small nuclear ribonucleoprotein Sm D3.	PRP18 pre-mRNA processing factor 18 homolog (yeast).	0.619
LOC108437378	prpf3	ENSPNAP00000024183	ENSPNAP00000005240	Small nuclear ribonucleoprotein Sm D3.	PRP3 pre-mRNA processing factor 3 homolog (yeast).	0.956
LOC108437378	prpf4	ENSPNAP00000024183	ENSPNAP00000023580	Small nuclear ribonucleoprotein Sm D3.	PRP4 pre-mRNA processing factor 4 homolog (yeast).	0.961
LOC108437378	prpf6	ENSPNAP00000024183	ENSPNAP00000010060	Small nuclear ribonucleoprotein Sm D3.	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).	0.983
LOC108437378	prpf8	ENSPNAP00000024183	ENSPNAP00000002818	Small nuclear ribonucleoprotein Sm D3.	Pre-mRNA processing factor 8.	0.977
LOC108437378	rbmx2	ENSPNAP00000024183	ENSPNAP00000029577	Small nuclear ribonucleoprotein Sm D3.	RRM domain-containing protein.	0.850
LOC108437378	rnpc3	ENSPNAP00000024183	ENSPNAP00000023324	Small nuclear ribonucleoprotein Sm D3.	RNA-binding region (RNP1, RRM) containing 3.	0.931
LOC108437378	sart1	ENSPNAP00000024183	ENSPNAP00000006224	Small nuclear ribonucleoprotein Sm D3.	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	0.926
LOC108437378	sf3b1	ENSPNAP00000024183	ENSPNAP00000001630	Small nuclear ribonucleoprotein Sm D3.	Splicing factor 3b, subunit 1.	0.965