STRINGSTRING
xab2 xab2 crnkl1 crnkl1 sart3 sart3 pdcd11 pdcd11 zfc3h1 zfc3h1 prpf39 prpf39 LOC108418277 LOC108418277 utp6 utp6 prpf6 prpf6 cstf3 cstf3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
xab2XPA binding protein 2. (847 aa)
crnkl1Crooked neck pre-mRNA splicing factor 1. (746 aa)
sart3Spliceosome associated factor 3, U4/U6 recycling protein. (953 aa)
pdcd11Programmed cell death 11. (1736 aa)
zfc3h1zf-C3H1 domain-containing protein. (1731 aa)
prpf39PRP39 pre-mRNA processing factor 39 homolog (yeast). (779 aa)
LOC108418277Si:ch211-114c17.1. (723 aa)
utp6UTP6 small subunit processome component. (569 aa)
prpf6PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (974 aa)
cstf3Cleavage stimulation factor, 3' pre-RNA, subunit 3. (716 aa)
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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