25 items (Pygocentrus nattereri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	lsm7	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (103 aa)
	LOC108428766	LSM14A mRNA processing body assembly factor a. (428 aa)
	lsm8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (143 aa)
	lsm14b	LSM family member 14B. (384 aa)
	snrpe	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	snrpb	Small nuclear ribonucleoprotein-associated protein. (243 aa)
	lsm4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (134 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
	ENSPNAP00000013234	Small nuclear ribonucleoprotein polypeptide F. (85 aa)
	edc3	Enhancer of mRNA decapping 3 homolog (S. cerevisiae). (504 aa)
	snrpg	Small nuclear ribonucleoprotein G. (76 aa)
	lsm3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (103 aa)
	lsm14a	LSM14A mRNA processing body assembly factor b. (480 aa)
	snrpd2	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	lsm12	LSM12 homolog b. (205 aa)
	lsm2	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
	LOC108437378	Small nuclear ribonucleoprotein Sm D3. (128 aa)
	atxn2	Ataxin 2. (1043 aa)
	lsm5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
	lsm1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (133 aa)
	lsm6	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
	lsm11	LSM11, U7 small nuclear RNA associated. (343 aa)
	naa38	N(alpha)-acetyltransferase 38, NatC auxiliary subunit. (116 aa)
	LSM10	LSM10, U7 small nuclear RNA associated. (120 aa)

Your Current Organism:

Pygocentrus nattereri

NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPNAP00000013234	LOC108437378	ENSPNAP00000013234	ENSPNAP00000024183	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein Sm D3.	0.998
ENSPNAP00000013234	LSM10	ENSPNAP00000013234	ENSPNAP00000037283	Small nuclear ribonucleoprotein polypeptide F.	LSM10, U7 small nuclear RNA associated.	0.999
ENSPNAP00000013234	lsm1	ENSPNAP00000013234	ENSPNAP00000028106	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.860
ENSPNAP00000013234	lsm11	ENSPNAP00000013234	ENSPNAP00000031670	Small nuclear ribonucleoprotein polypeptide F.	LSM11, U7 small nuclear RNA associated.	0.981
ENSPNAP00000013234	lsm2	ENSPNAP00000013234	ENSPNAP00000020841	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
ENSPNAP00000013234	lsm3	ENSPNAP00000013234	ENSPNAP00000017243	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.990
ENSPNAP00000013234	lsm4	ENSPNAP00000013234	ENSPNAP00000010969	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.993
ENSPNAP00000013234	lsm5	ENSPNAP00000013234	ENSPNAP00000026422	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.997
ENSPNAP00000013234	lsm6	ENSPNAP00000013234	ENSPNAP00000031435	Small nuclear ribonucleoprotein polypeptide F.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.990
ENSPNAP00000013234	lsm7	ENSPNAP00000013234	ENSPNAP00000025185	Small nuclear ribonucleoprotein polypeptide F.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.997
ENSPNAP00000013234	lsm8	ENSPNAP00000013234	ENSPNAP00000003820	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.995
ENSPNAP00000013234	naa38	ENSPNAP00000013234	ENSPNAP00000032694	Small nuclear ribonucleoprotein polypeptide F.	N(alpha)-acetyltransferase 38, NatC auxiliary subunit.	0.993
ENSPNAP00000013234	snrpb	ENSPNAP00000013234	ENSPNAP00000010529	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein-associated protein.	0.997
ENSPNAP00000013234	snrpd1	ENSPNAP00000013234	ENSPNAP00000012098	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.999
ENSPNAP00000013234	snrpd2	ENSPNAP00000013234	ENSPNAP00000019039	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein Sm D2.	0.999
ENSPNAP00000013234	snrpd3	ENSPNAP00000013234	ENSPNAP00000004099	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein Sm D3.	0.998
ENSPNAP00000013234	snrpe	ENSPNAP00000013234	ENSPNAP00000007513	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
ENSPNAP00000013234	snrpg	ENSPNAP00000013234	ENSPNAP00000016325	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein G.	0.999
LOC108428766	atxn2	ENSPNAP00000000350	ENSPNAP00000025690	LSM14A mRNA processing body assembly factor a.	Ataxin 2.	0.407
LOC108428766	edc3	ENSPNAP00000000350	ENSPNAP00000013774	LSM14A mRNA processing body assembly factor a.	Enhancer of mRNA decapping 3 homolog (S. cerevisiae).	0.870