STRINGSTRING
sec13 sec13 nup153 nup153 nup188 nup188 nup58 nup58 nup210 nup210 snrpg snrpg prmt5 prmt5 LOC108440085 LOC108440085 ENSPNAP00000013234 ENSPNAP00000013234 ddx20 ddx20 gemin8 gemin8 snrpd1 snrpd1 gemin2 gemin2 nup160 nup160 nup93 nup93 gemin5 gemin5 snrpb snrpb tpr tpr nup88 nup88 nup37 nup37 rae1 rae1 nup133 nup133 pom121c pom121c LOC108426214 LOC108426214 nup35 nup35 snrpe snrpe gemin6 gemin6 ndc1 ndc1 snrpd3 snrpd3 NUP54 NUP54 nup42 nup42 gemin4 gemin4 nup107 nup107 nup50 nup50 nup214 nup214 wdr77 wdr77 ENSPNAP00000036433 ENSPNAP00000036433 snupn snupn tgs1 tgs1 nup205 nup205 clns1a clns1a nup85 nup85 nup155 nup155 nup98 nup98 nup43 nup43 LOC108437378 LOC108437378 aaas aaas gemin7 gemin7 LOC108440489 LOC108440489 seh1l seh1l snrpd2 snrpd2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
sec13SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family. (320 aa)
nup153Nucleoporin 153. (1458 aa)
nup188Nucleoporin 188. (1176 aa)
nup58Nucleoporin 58. (594 aa)
nup210Nucleoporin 210. (1878 aa)
snrpgSmall nuclear ribonucleoprotein G. (76 aa)
prmt5Protein arginine N-methyltransferase 5; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA); Belongs to the class I-like SAM-binding methyltransferase superfamily. (631 aa)
LOC108440085Nucleoporin 62 like. (493 aa)
ENSPNAP00000013234Small nuclear ribonucleoprotein polypeptide F. (85 aa)
ddx20DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family. (799 aa)
gemin8Gem (nuclear organelle) associated protein 8. (210 aa)
snrpd1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
gemin2Gem (nuclear organelle) associated protein 2. (307 aa)
nup160Nucleoporin 160. (1150 aa)
nup93Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (820 aa)
gemin5Gem (nuclear organelle) associated protein 5. (1484 aa)
snrpbSmall nuclear ribonucleoprotein-associated protein. (243 aa)
tprTranslocated promoter region b, nuclear basket protein. (2334 aa)
nup88Nucleoporin 88. (720 aa)
nup37Nucleoporin 37. (326 aa)
rae1Ribonucleic acid export 1. (369 aa)
nup133Nucleoporin 133. (1140 aa)
pom121cPOM121 transmembrane nucleoporin. (1209 aa)
LOC108426214Survival of motor neuron 1, telomeric. (318 aa)
nup35Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (315 aa)
snrpeSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
gemin6Gem (nuclear organelle) associated protein 6. (174 aa)
ndc1NDC1 transmembrane nucleoporin. (678 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (143 aa)
NUP54Nucleoporin 54. (496 aa)
nup42Nucleoporin 42. (382 aa)
gemin4Gem (nuclear organelle) associated protein 4. (1067 aa)
nup107Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (922 aa)
nup50Nucleoporin 50. (500 aa)
nup214Nup214_FG domain-containing protein. (1966 aa)
wdr77WD_REPEATS_REGION domain-containing protein. (260 aa)
ENSPNAP00000036433Uncharacterized protein. (712 aa)
snupnSnurportin-1; Functions as an U snRNP-specific nuclear import adapter. Involved in the trimethylguanosine (m3G)-cap-dependent nuclear import of U snRNPs. Binds specifically to the terminal m3G-cap U snRNAs. Belongs to the snurportin family. (360 aa)
tgs1LYN proto-oncogene, Src family tyrosine kinase. (817 aa)
nup205Nucleoporin 205. (1873 aa)
clns1aChloride channel, nucleotide-sensitive, 1A. (233 aa)
nup85Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (653 aa)
nup155Nucleoporin 155. (1391 aa)
nup98Nucleoporin 98. (1793 aa)
nup43Nucleoporin 43. (371 aa)
LOC108437378Small nuclear ribonucleoprotein Sm D3. (128 aa)
aaasAchalasia, adrenocortical insufficiency, alacrimia. (510 aa)
gemin7Gem (nuclear organelle) associated protein 7. (128 aa)
LOC108440489RAN binding protein 2. (2934 aa)
seh1lSEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family. (416 aa)
snrpd2Small nuclear ribonucleoprotein Sm D2. (118 aa)
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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