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eftud2 eftud2 NCBP1 NCBP1 snrnp40 snrnp40 POLR2E POLR2E polr2i polr2i LOC108437770 LOC108437770 txnl4a txnl4a LOC108415197 LOC108415197 gtf2f2 gtf2f2 zrsr2 zrsr2 snrnp25 snrnp25 sf3b2 sf3b2 LOC108430244 LOC108430244 polr2f polr2f LOC108437378 LOC108437378 sf3b4 sf3b4 rnpc3 rnpc3 gtf2f1 gtf2f1 sf3b5 sf3b5 ybx1 ybx1 snrpd2 snrpd2 polr2g polr2g ENSPNAP00000018148 ENSPNAP00000018148 zcrb1 zcrb1 snrnp48 snrnp48 ncbp2 ncbp2 snrpg snrpg snrnp35 snrnp35 ddx23 ddx23 ENSPNAP00000013234 ENSPNAP00000013234 polr2d polr2d snrpd1 snrpd1 snrnp70 snrnp70 ddx42 ddx42 YBX2 YBX2 ENSPNAP00000011272 ENSPNAP00000011272 polr2j polr2j snrpb snrpb prpf6 prpf6 sf3b3 sf3b3 polr2l polr2l LOC108431323 LOC108431323 snrpe snrpe pdcd7 pdcd7 srsf7 srsf7 LOC108437054 LOC108437054 polr2c polr2c polr2b polr2b polr2a polr2a snrnp200 snrnp200 polr2h polr2h snrpd3 snrpd3 prpf8 prpf8 sf3b6 sf3b6 sf3b1 sf3b1 zmat5 zmat5 LOC108414043 LOC108414043
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
eftud2Elongation factor Tu GTP binding domain containing 2. (971 aa)
NCBP1Nuclear cap binding protein subunit 1. (797 aa)
snrnp40Small nuclear ribonucleoprotein 40 (U5). (347 aa)
POLR2ERNA polymerase II subunit E. (210 aa)
polr2iDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
LOC108437770General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (265 aa)
txnl4aThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
LOC108415197Serine and arginine rich splicing factor 1a. (244 aa)
gtf2f2General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (253 aa)
zrsr2Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2. (524 aa)
snrnp25Small nuclear ribonucleoprotein 25. (179 aa)
sf3b2Splicing factor 3b, subunit 2. (882 aa)
LOC108430244Serine and arginine rich splicing factor 2a. (220 aa)
polr2fPolymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
LOC108437378Small nuclear ribonucleoprotein Sm D3. (128 aa)
sf3b4Splicing factor 3b, subunit 4. (392 aa)
rnpc3RNA-binding region (RNP1, RRM) containing 3. (515 aa)
gtf2f1Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (535 aa)
sf3b5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
ybx1Y box binding protein 1. (308 aa)
snrpd2Small nuclear ribonucleoprotein Sm D2. (118 aa)
polr2gPolymerase (RNA) II (DNA directed) polypeptide G-like. (172 aa)
ENSPNAP00000018148Uncharacterized protein. (118 aa)
zcrb1Zinc finger CCHC-type and RNA binding motif 1. (218 aa)
snrnp48Small nuclear ribonucleoprotein 48 (U11/U12). (340 aa)
ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (164 aa)
snrpgSmall nuclear ribonucleoprotein G. (76 aa)
snrnp35Small nuclear ribonucleoprotein 35 (U11/U12). (258 aa)
ddx23DEAD (Asp-Glu-Ala-Asp) box polypeptide 23; Belongs to the DEAD box helicase family. (743 aa)
ENSPNAP00000013234Small nuclear ribonucleoprotein polypeptide F. (85 aa)
polr2dPolymerase (RNA) II (DNA directed) polypeptide D. (143 aa)
snrpd1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
snrnp70Small nuclear ribonucleoprotein 70 (U1). (453 aa)
ddx42DEAD (Asp-Glu-Ala-Asp) box helicase 42. (934 aa)
YBX2Y-box binding protein 2. (324 aa)
ENSPNAP00000011272annotation not available (148 aa)
polr2jPolymerase (RNA) II (DNA directed) polypeptide J. (117 aa)
snrpbSmall nuclear ribonucleoprotein-associated protein. (243 aa)
prpf6PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (974 aa)
sf3b3Splicing factor 3b, subunit 3. (1217 aa)
polr2lPolymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
LOC108431323Serine and arginine rich splicing factor 1b. (241 aa)
snrpeSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
pdcd7Programmed cell death 7. (537 aa)
srsf7Serine and arginine rich splicing factor 7b. (240 aa)
LOC108437054Serine and arginine rich splicing factor 7a. (248 aa)
polr2cPolymerase (RNA) II (DNA directed) polypeptide C. (275 aa)
polr2bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
polr2aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1966 aa)
snrnp200Small nuclear ribonucleoprotein 200 (U5). (2068 aa)
polr2hDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (143 aa)
prpf8Pre-mRNA processing factor 8. (2338 aa)
sf3b6Splicing factor 3b, subunit 6. (125 aa)
sf3b1Splicing factor 3b, subunit 1. (1315 aa)
zmat5Zinc finger, matrin-type 5. (174 aa)
LOC108414043Uncharacterized protein. (241 aa)
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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