(12 nodes) ABC transporter transmembrane region network (Malassezia globosa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MGL_0393	Uncharacterized protein. (1517 aa)
	MGL_0727	Uncharacterized protein. (1521 aa)
	MGL_0829	Uncharacterized protein. (994 aa)
	MGL_1153	Uncharacterized protein. (1520 aa)
	MGL_1913	Uncharacterized protein. (1415 aa)
	MGL_2083	Uncharacterized protein. (479 aa)
	MGL_2084	Uncharacterized protein. (863 aa)
	MGL_2475	Uncharacterized protein. (705 aa)
	MGL_3212	ABC transmembrane type-1 domain-containing protein. (301 aa)
	MGL_3213	Uncharacterized protein. (953 aa)
	MGL_3657	Uncharacterized protein. (1485 aa)
	MGL_3990	Uncharacterized protein. (885 aa)

Your Current Organism:

Malassezia globosa

NCBI taxonomy Id: 425265
Other names: M. globosa CBS 7966, Malassezia globosa CBS 7966

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MGL_0829	MGL_2084	A8PVA8	A8Q0U7	Uncharacterized protein.	Uncharacterized protein.	0.405
MGL_0829	MGL_3990	A8PVA8	A8QCB5	Uncharacterized protein.	Uncharacterized protein.	0.418
MGL_2083	MGL_3212	A8Q0U4	A8Q865	Uncharacterized protein.	ABC transmembrane type-1 domain-containing protein.	0.421
MGL_2084	MGL_0829	A8Q0U7	A8PVA8	Uncharacterized protein.	Uncharacterized protein.	0.405
MGL_2475	MGL_3990	A8Q3W9	A8QCB5	Uncharacterized protein.	Uncharacterized protein.	0.697
MGL_3212	MGL_2083	A8Q865	A8Q0U4	ABC transmembrane type-1 domain-containing protein.	Uncharacterized protein.	0.421
MGL_3212	MGL_3213	A8Q865	A8Q867	ABC transmembrane type-1 domain-containing protein.	Uncharacterized protein.	0.899
MGL_3213	MGL_3212	A8Q867	A8Q865	Uncharacterized protein.	ABC transmembrane type-1 domain-containing protein.	0.899
MGL_3990	MGL_0829	A8QCB5	A8PVA8	Uncharacterized protein.	Uncharacterized protein.	0.418
MGL_3990	MGL_2475	A8QCB5	A8Q3W9	Uncharacterized protein.	Uncharacterized protein.	0.697