Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SES63948.1 | SES97247.1 | SAMN05660297_00037 | SAMN05660297_01058 | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | ATP-dependent DNA helicase, RecQ-like. | 0.484 |
| SES63948.1 | SET72253.1 | SAMN05660297_00037 | SAMN05660297_03276 | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.635 |
| SES63948.1 | polA | SAMN05660297_00037 | SAMN05660297_03407 | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.949 |
| SES63948.1 | rnhB | SAMN05660297_00037 | SAMN05660297_00176 | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.817 |
| SES63948.1 | topB | SAMN05660297_00037 | SAMN05660297_03237 | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | DNA topoisomerase-3; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.781 |
| SES69776.1 | SET29294.1 | SAMN05660297_00288 | SAMN05660297_01949 | Stage V sporulation protein K. | D-proline reductase (dithiol) PrdD. | 0.952 |
| SES69776.1 | SET72253.1 | SAMN05660297_00288 | SAMN05660297_03276 | Stage V sporulation protein K. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.960 |
| SES69776.1 | dinB | SAMN05660297_00288 | SAMN05660297_01392 | Stage V sporulation protein K. | DNA polymerase-4; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.552 |
| SES69776.1 | recA | SAMN05660297_00288 | SAMN05660297_00253 | Stage V sporulation protein K. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.660 |
| SES97247.1 | SES63948.1 | SAMN05660297_01058 | SAMN05660297_00037 | ATP-dependent DNA helicase, RecQ-like. | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.484 |
| SES97247.1 | SET16428.1 | SAMN05660297_01058 | SAMN05660297_01558 | ATP-dependent DNA helicase, RecQ-like. | MutS domain V; Belongs to the DNA mismatch repair MutS family. | 0.677 |
| SES97247.1 | SET29294.1 | SAMN05660297_01058 | SAMN05660297_01949 | ATP-dependent DNA helicase, RecQ-like. | D-proline reductase (dithiol) PrdD. | 0.894 |
| SES97247.1 | SET36633.1 | SAMN05660297_01058 | SAMN05660297_02166 | ATP-dependent DNA helicase, RecQ-like. | Exonuclease SbcC. | 0.922 |
| SES97247.1 | SET72253.1 | SAMN05660297_01058 | SAMN05660297_03276 | ATP-dependent DNA helicase, RecQ-like. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.832 |
| SES97247.1 | dinB | SAMN05660297_01058 | SAMN05660297_01392 | ATP-dependent DNA helicase, RecQ-like. | DNA polymerase-4; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.446 |
| SES97247.1 | polA | SAMN05660297_01058 | SAMN05660297_03407 | ATP-dependent DNA helicase, RecQ-like. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.991 |
| SES97247.1 | recA | SAMN05660297_01058 | SAMN05660297_00253 | ATP-dependent DNA helicase, RecQ-like. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.940 |
| SES97247.1 | recD2 | SAMN05660297_01058 | SAMN05660297_00683 | ATP-dependent DNA helicase, RecQ-like. | ATP-dependent DNA helicase, RecD/TraA family; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily. | 0.793 |
| SES97247.1 | rnhB | SAMN05660297_01058 | SAMN05660297_00176 | ATP-dependent DNA helicase, RecQ-like. | RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.764 |
| SES97247.1 | sbcD | SAMN05660297_01058 | SAMN05660297_02167 | ATP-dependent DNA helicase, RecQ-like. | Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.949 |
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