Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| hpf | rpsB | Mrad2831_2985 | Mrad2831_3450 | Sigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | PFAM: ribosomal protein S2; KEGG: mex:Mext_2073 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.871 |
| hpf | rpsD | Mrad2831_2985 | Mrad2831_1740 | Sigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | RNA-binding S4 domain protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.890 |
| hpf | rpsE | Mrad2831_2985 | Mrad2831_2201 | Sigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.896 |
| hpf | rpsG | Mrad2831_2985 | Mrad2831_2214 | Sigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.873 |
| hpf | rpsL | Mrad2831_2985 | Mrad2831_2213 | Sigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.896 |
| hpf | rpsS | Mrad2831_2985 | Mrad2831_2222 | Sigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.875 |
| rpsB | hpf | Mrad2831_3450 | Mrad2831_2985 | PFAM: ribosomal protein S2; KEGG: mex:Mext_2073 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Sigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | 0.871 |
| rpsB | rpsD | Mrad2831_3450 | Mrad2831_1740 | PFAM: ribosomal protein S2; KEGG: mex:Mext_2073 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | RNA-binding S4 domain protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
| rpsB | rpsE | Mrad2831_3450 | Mrad2831_2201 | PFAM: ribosomal protein S2; KEGG: mex:Mext_2073 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.999 |
| rpsB | rpsG | Mrad2831_3450 | Mrad2831_2214 | PFAM: ribosomal protein S2; KEGG: mex:Mext_2073 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
| rpsB | rpsL | Mrad2831_3450 | Mrad2831_2213 | PFAM: ribosomal protein S2; KEGG: mex:Mext_2073 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.999 |
| rpsB | rpsS | Mrad2831_3450 | Mrad2831_2222 | PFAM: ribosomal protein S2; KEGG: mex:Mext_2073 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.999 |
| rpsD | hpf | Mrad2831_1740 | Mrad2831_2985 | RNA-binding S4 domain protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | Sigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | 0.890 |
| rpsD | rpsB | Mrad2831_1740 | Mrad2831_3450 | RNA-binding S4 domain protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | PFAM: ribosomal protein S2; KEGG: mex:Mext_2073 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
| rpsD | rpsE | Mrad2831_1740 | Mrad2831_2201 | RNA-binding S4 domain protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.999 |
| rpsD | rpsG | Mrad2831_1740 | Mrad2831_2214 | RNA-binding S4 domain protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
| rpsD | rpsL | Mrad2831_1740 | Mrad2831_2213 | RNA-binding S4 domain protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.999 |
| rpsD | rpsS | Mrad2831_1740 | Mrad2831_2222 | RNA-binding S4 domain protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.999 |
| rpsE | hpf | Mrad2831_2201 | Mrad2831_2985 | Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | Sigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | 0.896 |
| rpsE | rpsB | Mrad2831_2201 | Mrad2831_3450 | Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | PFAM: ribosomal protein S2; KEGG: mex:Mext_2073 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
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