(12 nodes) RNA polymerase I complex network (Pyrenophora triticirepentis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTRG_00472	Uncharacterized protein. (268 aa)
	PTRG_01896	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1790 aa)
	PTRG_02006	DNA-directed RNA polymerase I polypeptide 2. (1178 aa)
	PTRG_02143	DNA-directed RNA polymerases I. (235 aa)
	PTRG_01170	DNA-directed RNA polymerase I and III 14 kDa polypeptide. (126 aa)
	PTRG_01220	Uncharacterized protein. (439 aa)
	PTRG_05242	DNA-directed RNA polymerase complex I subunit Rpa12. (113 aa)
	PTRG_06998	DNA-directed RNA polymerases I. (163 aa)
	PTRG_07610	DNA-directed RNA polymerases I and III subunit RPAC1. (376 aa)
	PTRG_08480	DNA-directed RNA polymerases N/8 kDa subunit superfamily. (77 aa)
	PTRG_09058	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (146 aa)
	PTRG_11904	Ribosomal DNA transcription factor Rrn3. (689 aa)

Your Current Organism:

Pyrenophora triticirepentis

NCBI taxonomy Id: 426418
Other names: P. tritici-repentis Pt-1C-BFP, Pyrenophora tritici-repentis Pt-1C-BFP

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTRG_00472	PTRG_01170	B2VQJ4	B2VVA3	Uncharacterized protein.	DNA-directed RNA polymerase I and III 14 kDa polypeptide.	0.998
PTRG_00472	PTRG_01220	B2VQJ4	B2VVK8	Uncharacterized protein.	Uncharacterized protein.	0.999
PTRG_00472	PTRG_01896	B2VQJ4	B2VT60	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
PTRG_00472	PTRG_02006	B2VQJ4	B2VTW1	Uncharacterized protein.	DNA-directed RNA polymerase I polypeptide 2.	0.999
PTRG_00472	PTRG_02143	B2VQJ4	B2VUN9	Uncharacterized protein.	DNA-directed RNA polymerases I.	0.999
PTRG_00472	PTRG_05242	B2VQJ4	B2W442	Uncharacterized protein.	DNA-directed RNA polymerase complex I subunit Rpa12.	0.983
PTRG_00472	PTRG_06998	B2VQJ4	B2WBI5	Uncharacterized protein.	DNA-directed RNA polymerases I.	0.999
PTRG_00472	PTRG_07610	B2VQJ4	B2WCA1	Uncharacterized protein.	DNA-directed RNA polymerases I and III subunit RPAC1.	0.999
PTRG_00472	PTRG_08480	B2VQJ4	B2WEA7	Uncharacterized protein.	DNA-directed RNA polymerases N/8 kDa subunit superfamily.	0.999
PTRG_00472	PTRG_09058	B2VQJ4	B2WGK3	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
PTRG_00472	PTRG_11904	B2VQJ4	B2WPN7	Uncharacterized protein.	Ribosomal DNA transcription factor Rrn3.	0.998
PTRG_01170	PTRG_00472	B2VVA3	B2VQJ4	DNA-directed RNA polymerase I and III 14 kDa polypeptide.	Uncharacterized protein.	0.998
PTRG_01170	PTRG_01220	B2VVA3	B2VVK8	DNA-directed RNA polymerase I and III 14 kDa polypeptide.	Uncharacterized protein.	0.990
PTRG_01170	PTRG_01896	B2VVA3	B2VT60	DNA-directed RNA polymerase I and III 14 kDa polypeptide.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
PTRG_01170	PTRG_02006	B2VVA3	B2VTW1	DNA-directed RNA polymerase I and III 14 kDa polypeptide.	DNA-directed RNA polymerase I polypeptide 2.	0.997
PTRG_01170	PTRG_02143	B2VVA3	B2VUN9	DNA-directed RNA polymerase I and III 14 kDa polypeptide.	DNA-directed RNA polymerases I.	0.999
PTRG_01170	PTRG_05242	B2VVA3	B2W442	DNA-directed RNA polymerase I and III 14 kDa polypeptide.	DNA-directed RNA polymerase complex I subunit Rpa12.	0.989
PTRG_01170	PTRG_06998	B2VVA3	B2WBI5	DNA-directed RNA polymerase I and III 14 kDa polypeptide.	DNA-directed RNA polymerases I.	0.999
PTRG_01170	PTRG_07610	B2VVA3	B2WCA1	DNA-directed RNA polymerase I and III 14 kDa polypeptide.	DNA-directed RNA polymerases I and III subunit RPAC1.	0.999
PTRG_01170	PTRG_08480	B2VVA3	B2WEA7	DNA-directed RNA polymerase I and III 14 kDa polypeptide.	DNA-directed RNA polymerases N/8 kDa subunit superfamily.	0.999