(15 nodes) Transport along microtubule network (Pyrenophora triticirepentis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTRG_00179	Microtubule-associated protein RP/EB family member 1. (259 aa)
	PTRG_11609	Uncharacterized protein. (478 aa)
	PTRG_10815	Anucleate primary sterigmata protein A. (1859 aa)
	PTRG_10266	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (980 aa)
	PTRG_09593	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (624 aa)
	PTRG_08220	Uncharacterized protein. (774 aa)
	PTRG_08095	Cytoplasmic dynein 1 intermediate chain 2. (699 aa)
	PTRG_07951	CAP-Gly domain-containing protein. (735 aa)
	PTRG_07129	Nuclear movement protein. (190 aa)
	PTRG_05825	CAP-Gly domain-containing protein. (1173 aa)
	PTRG_04761	Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures. (96 aa)
	PTRG_04482	Uncharacterized protein. (749 aa)
	PTRG_02781	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (817 aa)
	PTRG_03132	Dynein heavy chain. (4325 aa)
	PTRG_01917	Nuclear distribution protein nudE. (587 aa)

Your Current Organism:

Pyrenophora triticirepentis

NCBI taxonomy Id: 426418
Other names: P. tritici-repentis Pt-1C-BFP, Pyrenophora tritici-repentis Pt-1C-BFP

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTRG_00179	PTRG_02781	B2VRR7	B2VZE1	Microtubule-associated protein RP/EB family member 1.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.944
PTRG_00179	PTRG_03132	B2VRR7	B2VX86	Microtubule-associated protein RP/EB family member 1.	Dynein heavy chain.	0.779
PTRG_00179	PTRG_05825	B2VRR7	B2W7N7	Microtubule-associated protein RP/EB family member 1.	CAP-Gly domain-containing protein.	0.853
PTRG_00179	PTRG_07951	B2VRR7	B2WD92	Microtubule-associated protein RP/EB family member 1.	CAP-Gly domain-containing protein.	0.954
PTRG_00179	PTRG_08095	B2VRR7	B2WDN6	Microtubule-associated protein RP/EB family member 1.	Cytoplasmic dynein 1 intermediate chain 2.	0.551
PTRG_00179	PTRG_08220	B2VRR7	B2WF59	Microtubule-associated protein RP/EB family member 1.	Uncharacterized protein.	0.480
PTRG_00179	PTRG_09593	B2VRR7	B2WHY4	Microtubule-associated protein RP/EB family member 1.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.893
PTRG_00179	PTRG_10266	B2VRR7	B2WK77	Microtubule-associated protein RP/EB family member 1.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.787
PTRG_00179	PTRG_10815	B2VRR7	B2WLF5	Microtubule-associated protein RP/EB family member 1.	Anucleate primary sterigmata protein A.	0.490
PTRG_00179	PTRG_11609	B2VRR7	B2WNP9	Microtubule-associated protein RP/EB family member 1.	Uncharacterized protein.	0.892
PTRG_01917	PTRG_03132	B2VTF3	B2VX86	Nuclear distribution protein nudE.	Dynein heavy chain.	0.594
PTRG_01917	PTRG_04761	B2VTF3	B2W561	Nuclear distribution protein nudE.	Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.	0.570
PTRG_01917	PTRG_05825	B2VTF3	B2W7N7	Nuclear distribution protein nudE.	CAP-Gly domain-containing protein.	0.504
PTRG_01917	PTRG_07129	B2VTF3	B2WBW6	Nuclear distribution protein nudE.	Nuclear movement protein.	0.849
PTRG_01917	PTRG_08095	B2VTF3	B2WDN6	Nuclear distribution protein nudE.	Cytoplasmic dynein 1 intermediate chain 2.	0.687
PTRG_02781	PTRG_00179	B2VZE1	B2VRR7	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Microtubule-associated protein RP/EB family member 1.	0.944
PTRG_02781	PTRG_03132	B2VZE1	B2VX86	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Dynein heavy chain.	0.783
PTRG_02781	PTRG_04761	B2VZE1	B2W561	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.	0.608
PTRG_02781	PTRG_05825	B2VZE1	B2W7N7	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	CAP-Gly domain-containing protein.	0.673
PTRG_02781	PTRG_07129	B2VZE1	B2WBW6	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Nuclear movement protein.	0.727