(7 nodes) HOPS complex network (Pyrenophora triticirepentis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTRG_10899	Uncharacterized protein. (147 aa)
	PTRG_07853	Vacuolar protein sorting-associated protein 33A; Belongs to the STXBP/unc-18/SEC1 family. (646 aa)
	PTRG_05956	Probable vacuolar protein sorting-associated protein 16 homolog; Essential for vacuolar protein sorting. Required for vacuole biogenesis, stability and to maintain vacuole morphology. (839 aa)
	PTRG_05750	Uncharacterized protein. (198 aa)
	PTRG_05440	Vacuolar morphogenesis protein AvaB. (1046 aa)
	PTRG_01246	DigA protein. (898 aa)
	PTRG_00931	E3 ubiquitin-protein ligase PEP5. (977 aa)

Your Current Organism:

Pyrenophora triticirepentis

NCBI taxonomy Id: 426418
Other names: P. tritici-repentis Pt-1C-BFP, Pyrenophora tritici-repentis Pt-1C-BFP

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTRG_00931	PTRG_01246	B2VU07	B2VVN4	E3 ubiquitin-protein ligase PEP5.	DigA protein.	0.998
PTRG_00931	PTRG_05440	B2VU07	B2W6K2	E3 ubiquitin-protein ligase PEP5.	Vacuolar morphogenesis protein AvaB.	0.998
PTRG_00931	PTRG_05750	B2VU07	B2W7G2	E3 ubiquitin-protein ligase PEP5.	Uncharacterized protein.	0.935
PTRG_00931	PTRG_05956	B2VU07	B2W818	E3 ubiquitin-protein ligase PEP5.	Probable vacuolar protein sorting-associated protein 16 homolog; Essential for vacuolar protein sorting. Required for vacuole biogenesis, stability and to maintain vacuole morphology.	0.935
PTRG_00931	PTRG_07853	B2VU07	B2WCZ4	E3 ubiquitin-protein ligase PEP5.	Vacuolar protein sorting-associated protein 33A; Belongs to the STXBP/unc-18/SEC1 family.	0.997
PTRG_00931	PTRG_10899	B2VU07	B2WLN9	E3 ubiquitin-protein ligase PEP5.	Uncharacterized protein.	0.935
PTRG_01246	PTRG_00931	B2VVN4	B2VU07	DigA protein.	E3 ubiquitin-protein ligase PEP5.	0.998
PTRG_01246	PTRG_05440	B2VVN4	B2W6K2	DigA protein.	Vacuolar morphogenesis protein AvaB.	0.997
PTRG_01246	PTRG_05750	B2VVN4	B2W7G2	DigA protein.	Uncharacterized protein.	0.943
PTRG_01246	PTRG_05956	B2VVN4	B2W818	DigA protein.	Probable vacuolar protein sorting-associated protein 16 homolog; Essential for vacuolar protein sorting. Required for vacuole biogenesis, stability and to maintain vacuole morphology.	0.943
PTRG_01246	PTRG_07853	B2VVN4	B2WCZ4	DigA protein.	Vacuolar protein sorting-associated protein 33A; Belongs to the STXBP/unc-18/SEC1 family.	0.998
PTRG_01246	PTRG_10899	B2VVN4	B2WLN9	DigA protein.	Uncharacterized protein.	0.943
PTRG_05440	PTRG_00931	B2W6K2	B2VU07	Vacuolar morphogenesis protein AvaB.	E3 ubiquitin-protein ligase PEP5.	0.998
PTRG_05440	PTRG_01246	B2W6K2	B2VVN4	Vacuolar morphogenesis protein AvaB.	DigA protein.	0.997
PTRG_05440	PTRG_05750	B2W6K2	B2W7G2	Vacuolar morphogenesis protein AvaB.	Uncharacterized protein.	0.948
PTRG_05440	PTRG_05956	B2W6K2	B2W818	Vacuolar morphogenesis protein AvaB.	Probable vacuolar protein sorting-associated protein 16 homolog; Essential for vacuolar protein sorting. Required for vacuole biogenesis, stability and to maintain vacuole morphology.	0.948
PTRG_05440	PTRG_07853	B2W6K2	B2WCZ4	Vacuolar morphogenesis protein AvaB.	Vacuolar protein sorting-associated protein 33A; Belongs to the STXBP/unc-18/SEC1 family.	0.998
PTRG_05440	PTRG_10899	B2W6K2	B2WLN9	Vacuolar morphogenesis protein AvaB.	Uncharacterized protein.	0.948
PTRG_05750	PTRG_00931	B2W7G2	B2VU07	Uncharacterized protein.	E3 ubiquitin-protein ligase PEP5.	0.935
PTRG_05750	PTRG_01246	B2W7G2	B2VVN4	Uncharacterized protein.	DigA protein.	0.943