STRINGSTRING
PTRG_00780 PTRG_00780 PTRG_03331 PTRG_03331 PTRG_08224 PTRG_08224 PTRG_02906 PTRG_02906 PTRG_02949 PTRG_02949 PTRG_03925 PTRG_03925 PTRG_03630 PTRG_03630 PTRG_05035 PTRG_05035 PTRG_05382 PTRG_05382 PTRG_05448 PTRG_05448 PTRG_05475 PTRG_05475 PTRG_05845 PTRG_05845 PTRG_05915 PTRG_05915 PTRG_07354 PTRG_07354 PTRG_07400 PTRG_07400 PTRG_08131 PTRG_08131 PTRG_10300 PTRG_10300 PTRG_10866 PTRG_10866 PTRG_09367 PTRG_09367 PTRG_10271 PTRG_10271 PTRG_00436 PTRG_00436 PTRG_00114 PTRG_00114 PTRG_00599 PTRG_00599
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PTRG_00780RNase_PH domain-containing protein. (368 aa)
PTRG_03331Exosome complex exonuclease Rrp. (786 aa)
PTRG_08224PAP-associated domain containing protein 5. (599 aa)
PTRG_02906Uncharacterized protein. (573 aa)
PTRG_02949Uncharacterized protein. (274 aa)
PTRG_03925ATP-dependent RNA helicase DOB1. (1054 aa)
PTRG_03630Uncharacterized protein. (424 aa)
PTRG_05035Uncharacterized protein. (1393 aa)
PTRG_053823' exoribonuclease family protein. (347 aa)
PTRG_05448Uncharacterized protein. (481 aa)
PTRG_05475Sec2p domain-containing protein. (252 aa)
PTRG_05845Exosome component 1. (211 aa)
PTRG_05915RNase_PH domain-containing protein. (243 aa)
PTRG_07354Exosome complex exonuclease RRP40. (239 aa)
PTRG_07400Exosome-associated family protein. (369 aa)
PTRG_0813126S protease regulatory subunit 8; Belongs to the AAA ATPase family. (389 aa)
PTRG_10300Exosome complex exonuclease RRP41. (250 aa)
PTRG_108665'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins. (1391 aa)
PTRG_093673' exoribonuclease. (291 aa)
PTRG_10271Protein DOM34 homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (393 aa)
PTRG_00436Ribonuclease R; Belongs to the RNR ribonuclease family. (989 aa)
PTRG_00114Exosome component 2. (348 aa)
PTRG_00599Ubiquitin fusion degradation protein. (357 aa)
Your Current Organism:
Pyrenophora triticirepentis
NCBI taxonomy Id: 426418
Other names: P. tritici-repentis Pt-1C-BFP, Pyrenophora tritici-repentis Pt-1C-BFP
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.