(42 nodes) Catalytic step 2 spliceosome network (Pyrenophora triticirepentis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTRG_00409	Small nuclear ribonucleoprotein F. (93 aa)
	PTRG_00441	Splicing factor 3a subunit 2. (235 aa)
	PTRG_00450	Pre-mRNA-splicing factor syf2. (317 aa)
	PTRG_00665	Pre-mRNA-splicing factor clf1. (683 aa)
	PTRG_00796	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (165 aa)
	PTRG_02020	RRM domain-containing protein. (159 aa)
	PTRG_00930	Pre-mRNA-splicing factor prp46. (499 aa)
	PTRG_02297	Pre-mRNA-splicing factor prp1. (929 aa)
	PTRG_01324	Peptidyl-prolyl isomerase CWC27. (489 aa)
	PTRG_02593	Uncharacterized protein. (221 aa)
	PTRG_02717	Peptidylprolyl isomerase domain and WD repeat-containing protein 1. (487 aa)
	PTRG_03484	Splicing factor 3b. (567 aa)
	PTRG_03532	Uncharacterized protein. (469 aa)
	PTRG_04463	Cell cycle control protein cwf17. (399 aa)
	PTRG_04554	GTP-binding protein EsdC. (262 aa)
	PTRG_04638	Uncharacterized protein. (267 aa)
	PTRG_06107	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
	PTRG_06152	Peptidyl-prolyl cis-trans isomerase E. (154 aa)
	PTRG_07253	Pre-mRNA-splicing factor cwc22. (707 aa)
	PTRG_07300	Transcriptional repressor rco-1. (455 aa)
	PTRG_07308	Splicing factor 3a. (519 aa)
	PTRG_07773	Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16. (976 aa)
	PTRG_07949	Small nuclear ribonucleoprotein G. (84 aa)
	PTRG_07959	Elongation factor 2. (995 aa)
	PTRG_07986	Splicing factor 3B subunit 1. (1197 aa)
	PTRG_08031	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	PTRG_08529	Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. (1451 aa)
	PTRG_08575	Pre-mRNA-splicing factor slt11. (375 aa)
	PTRG_08713	Pre-mRNA-splicing ATP-dependent RNA helicase PRP28; Belongs to the DEAD box helicase family. (690 aa)
	PTRG_08770	Sm domain-containing protein. (221 aa)
	PTRG_08981	Pre-mRNA-splicing factor syf1. (836 aa)
	PTRG_09147	Uncharacterized protein. (242 aa)
	PTRG_09366	Pre-mRNA-splicing factor cwc15. (239 aa)
	PTRG_09375	Pinin/SDK/memA domain containing protein. (283 aa)
	PTRG_09533	Cell cycle control protein cwf16. (292 aa)
	PTRG_09541	ATP-dependent RNA helicase fal1; Belongs to the DEAD box helicase family. (399 aa)
	PTRG_09919	Uncharacterized protein. (41 aa)
	PTRG_10060	Small nuclear ribonucleoprotein Sm D2. (117 aa)
	PTRG_10318	Pre-mRNA processing splicing factor 8. (2915 aa)
	PTRG_10403	Sm domain-containing protein. (131 aa)
	PTRG_10665	Uncharacterized protein. (531 aa)
	PTRG_10940	Mitogen-activated protein kinase organizer 1. (337 aa)

Your Current Organism:

Pyrenophora triticirepentis

NCBI taxonomy Id: 426418
Other names: P. tritici-repentis Pt-1C-BFP, Pyrenophora tritici-repentis Pt-1C-BFP

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTRG_00409	PTRG_00441	B2VQW0	B2VR14	Small nuclear ribonucleoprotein F.	Splicing factor 3a subunit 2.	0.979
PTRG_00409	PTRG_00450	B2VQW0	B2VR23	Small nuclear ribonucleoprotein F.	Pre-mRNA-splicing factor syf2.	0.902
PTRG_00409	PTRG_00665	B2VQW0	B2VSG1	Small nuclear ribonucleoprotein F.	Pre-mRNA-splicing factor clf1.	0.990
PTRG_00409	PTRG_00796	B2VQW0	B2VT81	Small nuclear ribonucleoprotein F.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.474
PTRG_00409	PTRG_00930	B2VQW0	B2VU06	Small nuclear ribonucleoprotein F.	Pre-mRNA-splicing factor prp46.	0.965
PTRG_00409	PTRG_01324	B2VQW0	B2VVW2	Small nuclear ribonucleoprotein F.	Peptidyl-prolyl isomerase CWC27.	0.920
PTRG_00409	PTRG_02020	B2VQW0	B2VTX5	Small nuclear ribonucleoprotein F.	RRM domain-containing protein.	0.964
PTRG_00409	PTRG_02297	B2VQW0	B2VVI2	Small nuclear ribonucleoprotein F.	Pre-mRNA-splicing factor prp1.	0.996
PTRG_00409	PTRG_02593	B2VQW0	B2VYV3	Small nuclear ribonucleoprotein F.	Uncharacterized protein.	0.937
PTRG_00409	PTRG_02717	B2VQW0	B2VZ77	Small nuclear ribonucleoprotein F.	Peptidylprolyl isomerase domain and WD repeat-containing protein 1.	0.657
PTRG_00409	PTRG_03484	B2VQW0	B2W236	Small nuclear ribonucleoprotein F.	Splicing factor 3b.	0.982
PTRG_00409	PTRG_04463	B2VQW0	B2W4B3	Small nuclear ribonucleoprotein F.	Cell cycle control protein cwf17.	0.985
PTRG_00409	PTRG_04638	B2VQW0	B2W4T8	Small nuclear ribonucleoprotein F.	Uncharacterized protein.	0.669
PTRG_00409	PTRG_06107	B2VQW0	B2W5U9	Small nuclear ribonucleoprotein F.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.935
PTRG_00409	PTRG_06152	B2VQW0	B2W5Z4	Small nuclear ribonucleoprotein F.	Peptidyl-prolyl cis-trans isomerase E.	0.846
PTRG_00409	PTRG_07253	B2VQW0	B2WAE0	Small nuclear ribonucleoprotein F.	Pre-mRNA-splicing factor cwc22.	0.900
PTRG_00409	PTRG_07300	B2VQW0	B2WAI7	Small nuclear ribonucleoprotein F.	Transcriptional repressor rco-1.	0.986
PTRG_00409	PTRG_07308	B2VQW0	B2WAJ5	Small nuclear ribonucleoprotein F.	Splicing factor 3a.	0.967
PTRG_00409	PTRG_07773	B2VQW0	B2WCR4	Small nuclear ribonucleoprotein F.	Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16.	0.938
PTRG_00409	PTRG_07949	B2VQW0	B2WD90	Small nuclear ribonucleoprotein F.	Small nuclear ribonucleoprotein G.	0.999