(6 nodes) Heat shock protein 70kD, C-terminal domain superfamily network (Pyrenophora triticirepentis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTRG_02664	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family. (647 aa)
	PTRG_04937	Heat shock protein Hsp88. (723 aa)
	PTRG_06604	Heat shock 70 kDa protein C; Belongs to the heat shock protein 70 family. (655 aa)
	PTRG_07854	Heat shock protein SSB; Belongs to the heat shock protein 70 family. (577 aa)
	PTRG_10549	Chaperone protein dnaK. (1013 aa)
	PTRG_11256	Heat shock 70 kDa protein, mitochondrial; Belongs to the heat shock protein 70 family. (672 aa)

Your Current Organism:

Pyrenophora triticirepentis

NCBI taxonomy Id: 426418
Other names: P. tritici-repentis Pt-1C-BFP, Pyrenophora tritici-repentis Pt-1C-BFP

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTRG_02664	PTRG_04937	B2VZ24	B2W387	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	Heat shock protein Hsp88.	0.917
PTRG_02664	PTRG_06604	B2VZ24	B2W9E6	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	Heat shock 70 kDa protein C; Belongs to the heat shock protein 70 family.	0.834
PTRG_02664	PTRG_07854	B2VZ24	B2WCZ5	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	Heat shock protein SSB; Belongs to the heat shock protein 70 family.	0.861
PTRG_02664	PTRG_11256	B2VZ24	B2WMP6	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	Heat shock 70 kDa protein, mitochondrial; Belongs to the heat shock protein 70 family.	0.778
PTRG_04937	PTRG_02664	B2W387	B2VZ24	Heat shock protein Hsp88.	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	0.917
PTRG_04937	PTRG_06604	B2W387	B2W9E6	Heat shock protein Hsp88.	Heat shock 70 kDa protein C; Belongs to the heat shock protein 70 family.	0.909
PTRG_04937	PTRG_07854	B2W387	B2WCZ5	Heat shock protein Hsp88.	Heat shock protein SSB; Belongs to the heat shock protein 70 family.	0.917
PTRG_04937	PTRG_10549	B2W387	B2WKN9	Heat shock protein Hsp88.	Chaperone protein dnaK.	0.871
PTRG_04937	PTRG_11256	B2W387	B2WMP6	Heat shock protein Hsp88.	Heat shock 70 kDa protein, mitochondrial; Belongs to the heat shock protein 70 family.	0.938
PTRG_06604	PTRG_02664	B2W9E6	B2VZ24	Heat shock 70 kDa protein C; Belongs to the heat shock protein 70 family.	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	0.834
PTRG_06604	PTRG_04937	B2W9E6	B2W387	Heat shock 70 kDa protein C; Belongs to the heat shock protein 70 family.	Heat shock protein Hsp88.	0.909
PTRG_06604	PTRG_07854	B2W9E6	B2WCZ5	Heat shock 70 kDa protein C; Belongs to the heat shock protein 70 family.	Heat shock protein SSB; Belongs to the heat shock protein 70 family.	0.979
PTRG_06604	PTRG_10549	B2W9E6	B2WKN9	Heat shock 70 kDa protein C; Belongs to the heat shock protein 70 family.	Chaperone protein dnaK.	0.992
PTRG_06604	PTRG_11256	B2W9E6	B2WMP6	Heat shock 70 kDa protein C; Belongs to the heat shock protein 70 family.	Heat shock 70 kDa protein, mitochondrial; Belongs to the heat shock protein 70 family.	0.840
PTRG_07854	PTRG_02664	B2WCZ5	B2VZ24	Heat shock protein SSB; Belongs to the heat shock protein 70 family.	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	0.861
PTRG_07854	PTRG_04937	B2WCZ5	B2W387	Heat shock protein SSB; Belongs to the heat shock protein 70 family.	Heat shock protein Hsp88.	0.917
PTRG_07854	PTRG_06604	B2WCZ5	B2W9E6	Heat shock protein SSB; Belongs to the heat shock protein 70 family.	Heat shock 70 kDa protein C; Belongs to the heat shock protein 70 family.	0.979
PTRG_07854	PTRG_11256	B2WCZ5	B2WMP6	Heat shock protein SSB; Belongs to the heat shock protein 70 family.	Heat shock 70 kDa protein, mitochondrial; Belongs to the heat shock protein 70 family.	0.780
PTRG_10549	PTRG_04937	B2WKN9	B2W387	Chaperone protein dnaK.	Heat shock protein Hsp88.	0.871
PTRG_10549	PTRG_06604	B2WKN9	B2W9E6	Chaperone protein dnaK.	Heat shock 70 kDa protein C; Belongs to the heat shock protein 70 family.	0.992