41 items (Pyrenophora triticirepentis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTRG_00596	Heat shock factor protein HSF8. (773 aa)
	PTRG_00545	CS domain-containing protein. (227 aa)
	PTRG_00298	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (457 aa)
	PTRG_00345	Inositol-pentakisphosphate 2-kinase; Phosphorylates Ins(1,3,4,5,6)P5 at position 2 to form Ins(1,2,3,4,5,6)P6 (InsP6 or phytate). (400 aa)
	PTRG_01827	Transcription factor prr1. (586 aa)
	PTRG_01906	Autoinducer 2 sensor kinase/phosphatase luxQ. (2314 aa)
	PTRG_02072	Autoinducer 2 sensor kinase/phosphatase luxQ. (389 aa)
	PTRG_01047	Uncharacterized protein. (1147 aa)
	PTRG_01111	Two component histidine kinase 1. (986 aa)
	PTRG_01234	Two-component system protein A. (678 aa)
	PTRG_01541	Response regulatory domain-containing protein. (848 aa)
	PTRG_03100	Uncharacterized protein. (930 aa)
	PTRG_03336	Flavin_Reduct domain-containing protein. (873 aa)
	PTRG_02391	Uncharacterized protein. (1268 aa)
	PTRG_02557	Ethylene receptor. (1686 aa)
	PTRG_04163	Peroxidase; Belongs to the peroxidase family. (374 aa)
	PTRG_03688	Histidine kinase G7. (1188 aa)
	PTRG_03699	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. (698 aa)
	PTRG_03832	Two-component sensor protein histidine protein kinase. (1149 aa)
	PTRG_04523	Osmolarity two-component system protein sln1. (1161 aa)
	PTRG_04528	Signal transduction histidine-protein kinase barA. (1326 aa)
	PTRG_04577	Autoinducer 2 sensor kinase/phosphatase luxQ. (857 aa)
	PTRG_04605	Uncharacterized protein. (1523 aa)
	PTRG_04731	Proteasome-activating nucleotidase. (568 aa)
	PTRG_05737	Uncharacterized protein. (488 aa)
	PTRG_05780	Histidine kinase domain-containing protein. (1106 aa)
	PTRG_05837	Cell division cycle protein 48; Belongs to the AAA ATPase family. (818 aa)
	PTRG_05972	Two-component system protein A. (565 aa)
	PTRG_06624	Phytochrome E. (1347 aa)
	PTRG_07391	Heat shock protein 90. (702 aa)
	PTRG_07064	ATP-dependent Zn protease. (531 aa)
	PTRG_07596	Autoinducer 2 sensor kinase/phosphatase luxQ. (918 aa)
	PTRG_08428	HSF-type DNA-binding domain containing protein. (547 aa)
	PTRG_08552	Uncharacterized protein. (153 aa)
	PTRG_08739	Sensor protein rcsC. (884 aa)
	PTRG_09838	Uncharacterized protein. (1362 aa)
	PTRG_10404	Uncharacterized protein. (633 aa)
	PTRG_10154	Long-chain-alcohol oxidase. (745 aa)
	PTRG_10188	Uncharacterized protein. (187 aa)
	PTRG_10768	Two-component sensor protein histidine protein kinase. (927 aa)
	PTRG_11423	Response regulatory domain-containing protein. (715 aa)

Your Current Organism:

Pyrenophora triticirepentis

NCBI taxonomy Id: 426418
Other names: P. tritici-repentis Pt-1C-BFP, Pyrenophora tritici-repentis Pt-1C-BFP

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTRG_00298	PTRG_00596	B2VRU6	B2VQY3	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Heat shock factor protein HSF8.	0.726
PTRG_00298	PTRG_01827	B2VRU6	B2VSS1	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Transcription factor prr1.	0.984
PTRG_00298	PTRG_03336	B2VRU6	B2VXU0	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Flavin_Reduct domain-containing protein.	0.412
PTRG_00298	PTRG_05737	B2VRU6	B2W7E9	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Uncharacterized protein.	0.564
PTRG_00298	PTRG_07391	B2VRU6	B2WAS8	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Heat shock protein 90.	0.412
PTRG_00298	PTRG_08428	B2VRU6	B2WE55	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	HSF-type DNA-binding domain containing protein.	0.564
PTRG_00298	PTRG_10404	B2VRU6	B2WJQ8	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Uncharacterized protein.	0.564
PTRG_00345	PTRG_00545	B2VS06	B2VR07	Inositol-pentakisphosphate 2-kinase; Phosphorylates Ins(1,3,4,5,6)P5 at position 2 to form Ins(1,2,3,4,5,6)P6 (InsP6 or phytate).	CS domain-containing protein.	0.423
PTRG_00345	PTRG_03699	B2VS06	B2W2Q1	Inositol-pentakisphosphate 2-kinase; Phosphorylates Ins(1,3,4,5,6)P5 at position 2 to form Ins(1,2,3,4,5,6)P6 (InsP6 or phytate).	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	0.416
PTRG_00545	PTRG_00345	B2VR07	B2VS06	CS domain-containing protein.	Inositol-pentakisphosphate 2-kinase; Phosphorylates Ins(1,3,4,5,6)P5 at position 2 to form Ins(1,2,3,4,5,6)P6 (InsP6 or phytate).	0.423
PTRG_00545	PTRG_00596	B2VR07	B2VQY3	CS domain-containing protein.	Heat shock factor protein HSF8.	0.986
PTRG_00545	PTRG_01047	B2VR07	B2VUJ1	CS domain-containing protein.	Uncharacterized protein.	0.423
PTRG_00545	PTRG_01111	B2VR07	B2VUX4	CS domain-containing protein.	Two component histidine kinase 1.	0.423
PTRG_00545	PTRG_01234	B2VR07	B2VVM2	CS domain-containing protein.	Two-component system protein A.	0.423
PTRG_00545	PTRG_01541	B2VR07	B2VWH9	CS domain-containing protein.	Response regulatory domain-containing protein.	0.423
PTRG_00545	PTRG_01827	B2VR07	B2VSS1	CS domain-containing protein.	Transcription factor prr1.	0.981
PTRG_00545	PTRG_01906	B2VR07	B2VTE2	CS domain-containing protein.	Autoinducer 2 sensor kinase/phosphatase luxQ.	0.492
PTRG_00545	PTRG_02072	B2VR07	B2VU99	CS domain-containing protein.	Autoinducer 2 sensor kinase/phosphatase luxQ.	0.477
PTRG_00545	PTRG_02391	B2VR07	B2VYA1	CS domain-containing protein.	Uncharacterized protein.	0.423
PTRG_00545	PTRG_02557	B2VR07	B2VYR7	CS domain-containing protein.	Ethylene receptor.	0.423