69 items (Pyrenophora triticirepentis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTRG_11702	Uncharacterized protein. (645 aa)
	PTRG_07030	Uncharacterized protein. (746 aa)
	PTRG_06945	Uncharacterized protein. (353 aa)
	PTRG_07376	CENP-T_C domain-containing protein. (445 aa)
	PTRG_07281	Uncharacterized protein. (292 aa)
	PTRG_06638	Uncharacterized protein. (618 aa)
	PTRG_06637	Uncharacterized protein. (438 aa)
	PTRG_06636	Uncharacterized protein. (360 aa)
	PTRG_06635	Uncharacterized protein. (222 aa)
	PTRG_06373	Protein kinase domain-containing protein. (376 aa)
	PTRG_05825	CAP-Gly domain-containing protein. (1173 aa)
	PTRG_05324	Rad21_Rec8_N domain-containing protein. (727 aa)
	PTRG_06072	SCD domain-containing protein. (1187 aa)
	PTRG_05174	Uncharacterized protein. (360 aa)
	PTRG_05099	Spindle pole body component. (1024 aa)
	PTRG_05058	Uncharacterized protein. (416 aa)
	PTRG_03663	Cupin domain containing protein. (685 aa)
	PTRG_03587	Protein kinase domain-containing protein. (396 aa)
	PTRG_03573	Spindle pole body component. (926 aa)
	PTRG_04171	BTB domain-containing protein. (276 aa)
	PTRG_02811	Uncharacterized protein. (850 aa)
	PTRG_02733	Condensin complex subunit 2; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. (804 aa)
	PTRG_02619	Uncharacterized protein. (420 aa)
	PTRG_02328	Spindle pole body component. (913 aa)
	PTRG_03307	Structural maintenance of chromosomes protein. (1471 aa)
	PTRG_03285	Anucleate primary sterigmata protein B. (1568 aa)
	PTRG_03229	ELYS domain-containing protein. (376 aa)
	PTRG_01917	Nuclear distribution protein nudE. (587 aa)
	PTRG_11509	Uncharacterized protein. (380 aa)
	PTRG_11170	Structural maintenance of chromosomes protein. (1350 aa)
	PTRG_11002	Condensin complex component cnd3. (1166 aa)
	PTRG_10917	Spindle pole body component. (798 aa)
	PTRG_10301	DNA repair and recombination protein RAD26; Belongs to the cytochrome P450 family. (1311 aa)
	PTRG_10266	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (980 aa)
	PTRG_10315	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (504 aa)
	PTRG_09973	Uncharacterized protein. (459 aa)
	PTRG_09833	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome. (462 aa)
	PTRG_09677	Sister chromatid cohesion and DNA repair protein (BimD). (1516 aa)
	PTRG_09573	Protein kinase domain-containing protein. (400 aa)
	PTRG_09477	Serine/threonine protein phosphatase. (418 aa)
	PTRG_09465	Uncharacterized protein. (930 aa)
	PTRG_09174	Kinetochore protein nuf2. (461 aa)
	PTRG_09001	Uncharacterized protein. (82 aa)
	PTRG_08801	Uncharacterized protein. (255 aa)
	PTRG_09246	Spindle pole body component. (756 aa)
	PTRG_08623	Uncharacterized protein. (827 aa)
	PTRG_08450	Uncharacterized protein. (754 aa)
	PTRG_07951	CAP-Gly domain-containing protein. (735 aa)
	PTRG_07776	Uncharacterized protein. (432 aa)
	PTRG_07644	Myosin IC heavy chain; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1228 aa)
	PTRG_07616	Casein kinase II subunit alpha; Belongs to the protein kinase superfamily. (342 aa)
	PTRG_07129	Nuclear movement protein. (190 aa)
	PTRG_07093	Structural maintenance of chromosomes protein. (1295 aa)
	PTRG_00822	Zn(2)-C6 fungal-type domain-containing protein. (738 aa)
	PTRG_00821	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (369 aa)
	mdm34	Mitochondrial distribution and morphology protein 34; Component of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum (ER) and mitochondria. Components of this complex are involved in the control of mitochondrial shape and protein biogenesis, and function in nonvesicular lipid trafficking between the ER and mitochondria. Mdm34 is required for the interaction of the ER-resident membrane protein mmm1 and the outer mitochondrial membrane-resident beta-barrel protein mdm10. (603 aa)
	PTRG_00179	Microtubule-associated protein RP/EB family member 1. (259 aa)
	PTRG_00200	Sfi1 domain-containing protein. (1126 aa)
	PTRG_11672	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. (1250 aa)
	PTRG_03174	Uncharacterized protein. (1117 aa)
	PTRG_01528	Spindle pole body component alp14. (881 aa)
	PTRG_02208	Uncharacterized protein. (806 aa)
	PTRG_02141	Spindle assembly checkpoint component MAD1. (724 aa)
	PTRG_00954	Uncharacterized protein. (2446 aa)
	PTRG_01993	Structural maintenance of chromosomes protein. (1206 aa)
	PTRG_00874	Uncharacterized protein. (465 aa)
	PTRG_00855	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (254 aa)
	PTRG_01928	Dynein. (526 aa)
	PTRG_07034	Uncharacterized protein. (391 aa)

Your Current Organism:

Pyrenophora triticirepentis

NCBI taxonomy Id: 426418
Other names: P. tritici-repentis Pt-1C-BFP, Pyrenophora tritici-repentis Pt-1C-BFP

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTRG_00179	PTRG_01528	B2VRR7	B2VWG6	Microtubule-associated protein RP/EB family member 1.	Spindle pole body component alp14.	0.954
PTRG_00179	PTRG_02141	B2VRR7	B2VUN7	Microtubule-associated protein RP/EB family member 1.	Spindle assembly checkpoint component MAD1.	0.568
PTRG_00179	PTRG_02328	B2VRR7	B2VY38	Microtubule-associated protein RP/EB family member 1.	Spindle pole body component.	0.493
PTRG_00179	PTRG_03573	B2VRR7	B2W2C5	Microtubule-associated protein RP/EB family member 1.	Spindle pole body component.	0.433
PTRG_00179	PTRG_05825	B2VRR7	B2W7N7	Microtubule-associated protein RP/EB family member 1.	CAP-Gly domain-containing protein.	0.853
PTRG_00179	PTRG_07034	B2VRR7	B2WBM1	Microtubule-associated protein RP/EB family member 1.	Uncharacterized protein.	0.804
PTRG_00179	PTRG_07776	B2VRR7	B2WCR7	Microtubule-associated protein RP/EB family member 1.	Uncharacterized protein.	0.773
PTRG_00179	PTRG_07951	B2VRR7	B2WD92	Microtubule-associated protein RP/EB family member 1.	CAP-Gly domain-containing protein.	0.954
PTRG_00179	PTRG_09001	B2VRR7	B2WGE5	Microtubule-associated protein RP/EB family member 1.	Uncharacterized protein.	0.530
PTRG_00179	PTRG_09174	B2VRR7	B2WGW8	Microtubule-associated protein RP/EB family member 1.	Kinetochore protein nuf2.	0.443
PTRG_00179	PTRG_09833	B2VRR7	B2WIM4	Microtubule-associated protein RP/EB family member 1.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.521
PTRG_00179	PTRG_10266	B2VRR7	B2WK77	Microtubule-associated protein RP/EB family member 1.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.787
PTRG_00179	PTRG_11509	B2VRR7	B2WN60	Microtubule-associated protein RP/EB family member 1.	Uncharacterized protein.	0.804
PTRG_00821	PTRG_00822	B2VTA6	B2VTA7	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	Zn(2)-C6 fungal-type domain-containing protein.	0.573
PTRG_00821	PTRG_00855	B2VTA6	B2VTL0	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	0.983
PTRG_00821	PTRG_00874	B2VTA6	B2VTM9	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	Uncharacterized protein.	0.961
PTRG_00821	PTRG_03307	B2VTA6	B2VXR1	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	Structural maintenance of chromosomes protein.	0.426
PTRG_00821	PTRG_07616	B2VTA6	B2WCA7	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	Casein kinase II subunit alpha; Belongs to the protein kinase superfamily.	0.988
PTRG_00821	mdm34	B2VTA6	B2VS19	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	Mitochondrial distribution and morphology protein 34; Component of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum (ER) and mitochondria. Components of this complex are involved in the control of mitochondrial shape and protein biogenesis, and function in nonvesicular lipid trafficking between the ER and mitochondria. Mdm34 is required for the interaction of the ER-resident membrane protein mmm1 and the outer mitochondrial membrane-resident beta-barrel protein mdm10.	0.848
PTRG_00822	PTRG_00821	B2VTA7	B2VTA6	Zn(2)-C6 fungal-type domain-containing protein.	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	0.573