(117 nodes) Ubiquitin mediated proteolysis network (Pyrenophora triticirepentis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTRG_04578	Meiosis-specific APC/C activator protein AMA1. (599 aa)
	PTRG_00085	Ubiquitin ligase complex F-box protein GRR1. (614 aa)
	PTRG_00153	F-box/WD repeat containing protein lin-23. (708 aa)
	PTRG_00313	Nuclear protein bimA. (765 aa)
	PTRG_00343	F-box/WD repeat containing protein pof1. (657 aa)
	PTRG_00630	Ubiquitin-conjugating enzyme E2-24 kDa; Belongs to the ubiquitin-conjugating enzyme family. (246 aa)
	PTRG_00682	TRAF-type zinc finger protein. (483 aa)
	PTRG_01815	BTB domain-containing protein. (249 aa)
	PTRG_01850	Stomatin family protein. (73 aa)
	PTRG_01851	Stomatin family protein. (300 aa)
	PTRG_00814	Ubiquitin-activating enzyme E1-like; Belongs to the ubiquitin-activating E1 family. (628 aa)
	PTRG_00816	Skp1_POZ domain-containing protein; Belongs to the SKP1 family. (102 aa)
	PTRG_00907	CIA30 family protein. (253 aa)
	PTRG_01980	Ubiquitin-conjugating enzyme E2-16 kDa; Belongs to the ubiquitin-conjugating enzyme family. (147 aa)
	PTRG_00938	BZIP domain-containing protein. (259 aa)
	PTRG_00950	Stomatin family protein. (411 aa)
	PTRG_00968	Ubiquitin-conjugating enzyme E2-21 kDa; Belongs to the ubiquitin-conjugating enzyme family. (233 aa)
	PTRG_00971	RING-box protein 1. (116 aa)
	PTRG_01023	TPT domain-containing protein. (340 aa)
	PTRG_01082	S-phase kinase-associated protein 1A; Belongs to the SKP1 family. (170 aa)
	PTRG_01092	Deoxyhypusine synthase. (357 aa)
	PTRG_01118	E3 SUMO-protein ligase PIAS1. (582 aa)
	PTRG_01187	Uncharacterized protein. (615 aa)
	PTRG_01238	NEDD8-activating enzyme E1 regulatory subunit. (412 aa)
	PTRG_01433	NEDD8-conjugating enzyme UBC12; Belongs to the ubiquitin-conjugating enzyme family. (150 aa)
	PTRG_01468	Ubiquitin-conjugating enzyme E2 15; Belongs to the ubiquitin-conjugating enzyme family. (169 aa)
	PTRG_01491	Ubiquitin. (229 aa)
	PTRG_01500	F-box/WD repeat containing protein 7. (910 aa)
	PTRG_01526	E3 ubiquitin-protein ligase NEDD4. (1205 aa)
	PTRG_01614	Ubiquitin-protein ligase E3A. (1195 aa)
	PTRG_01621	Ubiquitin-conjugating enzyme E2 H; Belongs to the ubiquitin-conjugating enzyme family. (170 aa)
	PTRG_01629	Ubiquitin-conjugating enzyme E2 2; Belongs to the ubiquitin-conjugating enzyme family. (151 aa)
	PTRG_03205	Negative regulator of mitosis. (2058 aa)
	PTRG_03258	BTB domain-containing protein. (149 aa)
	PTRG_03274	AN1-type zinc finger protein. (171 aa)
	PTRG_02390	Uncharacterized protein. (385 aa)
	PTRG_02492	Uncharacterized protein. (449 aa)
	PTRG_02494	Ubiquitin-conjugating enzyme E2 Q2. (1234 aa)
	PTRG_02651	WD repeat containing protein pop1. (1058 aa)
	PTRG_02694	UBIQUITIN_CONJUGAT_2 domain-containing protein. (1097 aa)
	PTRG_04043	Uncharacterized protein. (230 aa)
	PTRG_04093	Uncharacterized protein. (127 aa)
	PTRG_04100	Ubiquitin conjugation factor E4. (1095 aa)
	PTRG_04112	BTB domain-containing protein. (225 aa)
	PTRG_04214	E3 ubiquitin-protein ligase. (817 aa)
	PTRG_04219	CHY zinc finger domain containing protein. (689 aa)
	PTRG_03538	Integral membrane protein. (435 aa)
	PTRG_03612	Uncharacterized protein. (314 aa)
	PTRG_03826	BTB domain-containing protein. (238 aa)
	PTRG_03829	Ubiquitin-conjugating enzyme E2 1; Belongs to the ubiquitin-conjugating enzyme family. (157 aa)
	PTRG_05080	Ubiquitin. (128 aa)
	PTRG_05081	RRN7-type domain-containing protein. (430 aa)
	PTRG_05231	Cullin-2; Belongs to the cullin family. (769 aa)
	PTRG_04604	WW domain-containing protein. (338 aa)
	PTRG_04814	BTB domain-containing protein. (265 aa)
	PTRG_06198	F-box domain-containing protein. (474 aa)
	PTRG_05433	E3 ubiquitin-protein ligase HUWE1. (3930 aa)
	PTRG_05501	Cullin-4B; Belongs to the cullin family. (817 aa)
	PTRG_05597	Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family. (149 aa)
	PTRG_05762	Ubiquitin-protein ligase E4. (471 aa)
	PTRG_05840	APH domain-containing protein. (287 aa)
	PTRG_05848	Uncharacterized protein. (624 aa)
	PTRG_05916	Ubiquitin-conjugating enzyme E2 4. (167 aa)
	PTRG_05917	Uncharacterized protein. (399 aa)
	PTRG_05954	Protein regulator of cytokinesis 1. (768 aa)
	PTRG_05959	BTB domain-containing protein. (369 aa)
	PTRG_06258	Anaphase-promoting complex subunit Apc2; Belongs to the cullin family. (943 aa)
	PTRG_06291	PDCD2_C domain-containing protein. (433 aa)
	PTRG_06331	BTB domain-containing protein. (206 aa)
	PTRG_06363	RING finger domain containing protein. (777 aa)
	PTRG_06487	Thyroid hormone receptor interactor 12. (1828 aa)
	PTRG_06770	DUF1752 domain-containing protein. (533 aa)
	PTRG_07335	Anaphase-promoting complex protein. (746 aa)
	PTRG_07390	Uncharacterized protein. (430 aa)
	PTRG_07395	Uncharacterized protein. (307 aa)
	PTRG_07477	UBIQUITIN_CONJUGAT_2 domain-containing protein. (861 aa)
	PTRG_06911	WD_REPEATS_REGION domain-containing protein. (571 aa)
	PTRG_07579	Nucleolar complex protein 4. (565 aa)
	PTRG_07799	LysM domain-containing protein. (786 aa)
	PTRG_07855	Ubiquitin conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family. (139 aa)
	PTRG_07880	Uncharacterized protein. (1231 aa)
	PTRG_07925	Ubiquitin-conjugating enzyme E2Z. (446 aa)
	PTRG_07963	NEDD8-activating enzyme E1 catalytic subunit. (438 aa)
	PTRG_07965	Uncharacterized protein. (85 aa)
	PTRG_08079	Uncharacterized protein. (810 aa)
	PTRG_08334	Ubiquitin-conjugating enzyme E2 6. (276 aa)
	PTRG_08341	Uncharacterized protein. (793 aa)
	PTRG_08423	BTB domain-containing protein. (288 aa)
	PTRG_08424	Ubiquitin-conjugating enzyme E2-16 kDa. (153 aa)
	PTRG_08427	F-box domain-containing protein. (497 aa)
	PTRG_08238	Uncharacterized protein. (709 aa)
	PTRG_08722	DNA excision repair protein ERCC-8. (435 aa)
	PTRG_08898	Adaptin ear-binding coat-associated protein 2. (284 aa)
	PTRG_08974	DNA damage-binding protein 1. (1115 aa)
	PTRG_08990	Ubiquitin-activating enzyme E1; Belongs to the ubiquitin-activating E1 family. (1046 aa)
	PTRG_09028	F-box domain-containing protein. (1105 aa)
	PTRG_09029	F-box and WD domain containing protein. (796 aa)
	PTRG_09033	Uncharacterized protein. (324 aa)
	PTRG_09395	F-box/WD repeat containing protein pof1. (687 aa)
	PTRG_09419	RING-type domain-containing protein. (392 aa)
	PTRG_09520	Uncharacterized protein. (82 aa)
	PTRG_09532	Anaphase-promoting complex subunit Cut9. (635 aa)
	PTRG_09564	Ubiquitin-conjugating enzyme E2 15; Belongs to the ubiquitin-conjugating enzyme family. (165 aa)
	PTRG_09748	Ubiquitin-conjugating enzyme E2 6. (267 aa)
	PTRG_09903	Peptidyl-prolyl cis-trans isomerase cyp8. (559 aa)
	PTRG_10330	Anaphase-promoting complex subunit 10. (309 aa)
	PTRG_10421	Uncharacterized protein. (255 aa)
	PTRG_10204	Uncharacterized protein. (832 aa)
	PTRG_10294	Cyclic nucleotide-binding domain containing protein. (969 aa)
	PTRG_10995	Uncharacterized protein. (339 aa)
	PTRG_11082	Anaphase-promoting complex subunit CDC23. (644 aa)
	PTRG_11270	U-box domain containing protein. (308 aa)
	PTRG_11488	Ubiquitin. (154 aa)
	PTRG_11410	Ubiquitin-conjugating enzyme E2 S; Belongs to the ubiquitin-conjugating enzyme family. (429 aa)
	PTRG_11586	Cullin-3; Belongs to the cullin family. (822 aa)
	PTRG_11623	Uncharacterized protein. (757 aa)
	PTRG_11633	WD repeat containing protein. (522 aa)

Your Current Organism:

Pyrenophora triticirepentis

NCBI taxonomy Id: 426418
Other names: P. tritici-repentis Pt-1C-BFP, Pyrenophora tritici-repentis Pt-1C-BFP

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTRG_00085	PTRG_00153	B2VRK3	B2VRP1	Ubiquitin ligase complex F-box protein GRR1.	F-box/WD repeat containing protein lin-23.	0.697
PTRG_00085	PTRG_00343	B2VRK3	B2VS04	Ubiquitin ligase complex F-box protein GRR1.	F-box/WD repeat containing protein pof1.	0.861
PTRG_00085	PTRG_00816	B2VRK3	B2VTA1	Ubiquitin ligase complex F-box protein GRR1.	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	0.709
PTRG_00085	PTRG_00907	B2VRK3	B2VTR2	Ubiquitin ligase complex F-box protein GRR1.	CIA30 family protein.	0.606
PTRG_00085	PTRG_00938	B2VRK3	B2VU14	Ubiquitin ligase complex F-box protein GRR1.	BZIP domain-containing protein.	0.606
PTRG_00085	PTRG_00968	B2VRK3	B2VU44	Ubiquitin ligase complex F-box protein GRR1.	Ubiquitin-conjugating enzyme E2-21 kDa; Belongs to the ubiquitin-conjugating enzyme family.	0.437
PTRG_00085	PTRG_00971	B2VRK3	B2VU47	Ubiquitin ligase complex F-box protein GRR1.	RING-box protein 1.	0.942
PTRG_00085	PTRG_01082	B2VRK3	B2VUU5	Ubiquitin ligase complex F-box protein GRR1.	S-phase kinase-associated protein 1A; Belongs to the SKP1 family.	0.993
PTRG_00085	PTRG_01433	B2VRK3	B2VW71	Ubiquitin ligase complex F-box protein GRR1.	NEDD8-conjugating enzyme UBC12; Belongs to the ubiquitin-conjugating enzyme family.	0.660
PTRG_00085	PTRG_01491	B2VRK3	B2VWC9	Ubiquitin ligase complex F-box protein GRR1.	Ubiquitin.	0.709
PTRG_00085	PTRG_01500	B2VRK3	B2VWD8	Ubiquitin ligase complex F-box protein GRR1.	F-box/WD repeat containing protein 7.	0.697
PTRG_00085	PTRG_02651	B2VRK3	B2VZ11	Ubiquitin ligase complex F-box protein GRR1.	WD repeat containing protein pop1.	0.891
PTRG_00085	PTRG_05231	B2VRK3	B2W431	Ubiquitin ligase complex F-box protein GRR1.	Cullin-2; Belongs to the cullin family.	0.981
PTRG_00085	PTRG_07963	B2VRK3	B2WDA4	Ubiquitin ligase complex F-box protein GRR1.	NEDD8-activating enzyme E1 catalytic subunit.	0.625
PTRG_00085	PTRG_09395	B2VRK3	B2WHD6	Ubiquitin ligase complex F-box protein GRR1.	F-box/WD repeat containing protein pof1.	0.860
PTRG_00085	PTRG_11488	B2VRK3	B2WN39	Ubiquitin ligase complex F-box protein GRR1.	Ubiquitin.	0.606
PTRG_00085	PTRG_11586	B2VRK3	B2WNM6	Ubiquitin ligase complex F-box protein GRR1.	Cullin-3; Belongs to the cullin family.	0.918
PTRG_00153	PTRG_00085	B2VRP1	B2VRK3	F-box/WD repeat containing protein lin-23.	Ubiquitin ligase complex F-box protein GRR1.	0.697
PTRG_00153	PTRG_00343	B2VRP1	B2VS04	F-box/WD repeat containing protein lin-23.	F-box/WD repeat containing protein pof1.	0.780
PTRG_00153	PTRG_00630	B2VRP1	B2VS55	F-box/WD repeat containing protein lin-23.	Ubiquitin-conjugating enzyme E2-24 kDa; Belongs to the ubiquitin-conjugating enzyme family.	0.527