(7 nodes) Mixed, incl. Phosphopentomutase, and Cys/Met metabolism, pyridoxal phosphate-dependent enzyme network (Alkalibacterium pelagium)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SEK53749.1	Phosphopentomutase. (406 aa)
	SEK53788.1	Predicted amino acid racemase. (389 aa)
	SEK53868.1	Helix-turn-helix domain-containing protein. (307 aa)
	SEK53905.1	Aminotransferase class-V. (363 aa)
	SEK53943.1	Phosphotriesterase-related protein. (295 aa)
	SEK53981.1	Protein of unknown function. (433 aa)
	SEK54015.1	Protein of unknown function DUF2620. (122 aa)

Your Current Organism:

Alkalibacterium pelagium

NCBI taxonomy Id: 426702
Other names: A. pelagium, Alkalibacterium pelagium Ishikawa et al. 2009, DSM 19183, NBRC 103242, NRIC 0719, strain T143-1-1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEK53749.1	SEK53788.1	SAMN04488099_103178	SAMN04488099_103179	Phosphopentomutase.	Predicted amino acid racemase.	0.984
SEK53749.1	SEK53868.1	SAMN04488099_103178	SAMN04488099_103181	Phosphopentomutase.	Helix-turn-helix domain-containing protein.	0.949
SEK53749.1	SEK53905.1	SAMN04488099_103178	SAMN04488099_103182	Phosphopentomutase.	Aminotransferase class-V.	0.930
SEK53749.1	SEK53943.1	SAMN04488099_103178	SAMN04488099_103183	Phosphopentomutase.	Phosphotriesterase-related protein.	0.966
SEK53749.1	SEK53981.1	SAMN04488099_103178	SAMN04488099_103184	Phosphopentomutase.	Protein of unknown function.	0.893
SEK53749.1	SEK54015.1	SAMN04488099_103178	SAMN04488099_103185	Phosphopentomutase.	Protein of unknown function DUF2620.	0.890
SEK53788.1	SEK53749.1	SAMN04488099_103179	SAMN04488099_103178	Predicted amino acid racemase.	Phosphopentomutase.	0.984
SEK53788.1	SEK53868.1	SAMN04488099_103179	SAMN04488099_103181	Predicted amino acid racemase.	Helix-turn-helix domain-containing protein.	0.942
SEK53788.1	SEK53905.1	SAMN04488099_103179	SAMN04488099_103182	Predicted amino acid racemase.	Aminotransferase class-V.	0.935
SEK53788.1	SEK53943.1	SAMN04488099_103179	SAMN04488099_103183	Predicted amino acid racemase.	Phosphotriesterase-related protein.	0.970
SEK53788.1	SEK53981.1	SAMN04488099_103179	SAMN04488099_103184	Predicted amino acid racemase.	Protein of unknown function.	0.920
SEK53788.1	SEK54015.1	SAMN04488099_103179	SAMN04488099_103185	Predicted amino acid racemase.	Protein of unknown function DUF2620.	0.898
SEK53868.1	SEK53749.1	SAMN04488099_103181	SAMN04488099_103178	Helix-turn-helix domain-containing protein.	Phosphopentomutase.	0.949
SEK53868.1	SEK53788.1	SAMN04488099_103181	SAMN04488099_103179	Helix-turn-helix domain-containing protein.	Predicted amino acid racemase.	0.942
SEK53868.1	SEK53905.1	SAMN04488099_103181	SAMN04488099_103182	Helix-turn-helix domain-containing protein.	Aminotransferase class-V.	0.942
SEK53868.1	SEK53943.1	SAMN04488099_103181	SAMN04488099_103183	Helix-turn-helix domain-containing protein.	Phosphotriesterase-related protein.	0.942
SEK53868.1	SEK53981.1	SAMN04488099_103181	SAMN04488099_103184	Helix-turn-helix domain-containing protein.	Protein of unknown function.	0.905
SEK53868.1	SEK54015.1	SAMN04488099_103181	SAMN04488099_103185	Helix-turn-helix domain-containing protein.	Protein of unknown function DUF2620.	0.902
SEK53905.1	SEK53749.1	SAMN04488099_103182	SAMN04488099_103178	Aminotransferase class-V.	Phosphopentomutase.	0.930
SEK53905.1	SEK53788.1	SAMN04488099_103182	SAMN04488099_103179	Aminotransferase class-V.	Predicted amino acid racemase.	0.935