(5 nodes) U4/U6 x U5 tri-snRNP complex network (Fusarium nygamai)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FNYG_09260	WD_REPEATS_REGION domain-containing protein. (519 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (99 aa)
	FNYG_06365	Nop domain-containing protein. (630 aa)
	FNYG_02118	Uncharacterized protein. (643 aa)
	FNYG_00047	Uncharacterized protein. (485 aa)

Your Current Organism:

Fusarium nygamai

NCBI taxonomy Id: 42673
Other names: ATCC 58555, BBA 69862, CBS 749.97, DAOM 225148, F. nygamai, Gibberella nygamai, IMI 375354, NRRL 13448

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FNYG_00047	FNYG_02118	A0A2K0WWD2	A0A2K0WQD3	Uncharacterized protein.	Uncharacterized protein.	0.995
FNYG_00047	FNYG_06365	A0A2K0WWD2	A0A2K0WDC3	Uncharacterized protein.	Nop domain-containing protein.	0.997
FNYG_00047	FNYG_09260	A0A2K0WWD2	A0A2K0W534	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.998
FNYG_00047	LSM8	A0A2K0WWD2	A0A2K0W542	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.994
FNYG_02118	FNYG_00047	A0A2K0WQD3	A0A2K0WWD2	Uncharacterized protein.	Uncharacterized protein.	0.995
FNYG_02118	FNYG_06365	A0A2K0WQD3	A0A2K0WDC3	Uncharacterized protein.	Nop domain-containing protein.	0.997
FNYG_02118	FNYG_09260	A0A2K0WQD3	A0A2K0W534	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.992
FNYG_02118	LSM8	A0A2K0WQD3	A0A2K0W542	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.991
FNYG_06365	FNYG_00047	A0A2K0WDC3	A0A2K0WWD2	Nop domain-containing protein.	Uncharacterized protein.	0.997
FNYG_06365	FNYG_02118	A0A2K0WDC3	A0A2K0WQD3	Nop domain-containing protein.	Uncharacterized protein.	0.997
FNYG_06365	FNYG_09260	A0A2K0WDC3	A0A2K0W534	Nop domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.995
FNYG_06365	LSM8	A0A2K0WDC3	A0A2K0W542	Nop domain-containing protein.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.995
FNYG_09260	FNYG_00047	A0A2K0W534	A0A2K0WWD2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.998
FNYG_09260	FNYG_02118	A0A2K0W534	A0A2K0WQD3	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.992
FNYG_09260	FNYG_06365	A0A2K0W534	A0A2K0WDC3	WD_REPEATS_REGION domain-containing protein.	Nop domain-containing protein.	0.995
FNYG_09260	LSM8	A0A2K0W534	A0A2K0W542	WD_REPEATS_REGION domain-containing protein.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.989
LSM8	FNYG_00047	A0A2K0W542	A0A2K0WWD2	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.994
LSM8	FNYG_02118	A0A2K0W542	A0A2K0WQD3	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.991
LSM8	FNYG_06365	A0A2K0W542	A0A2K0WDC3	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	Nop domain-containing protein.	0.995
LSM8	FNYG_09260	A0A2K0W542	A0A2K0W534	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	WD_REPEATS_REGION domain-containing protein.	0.989