11 items (Fusarium nygamai) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FNYG_12511	Sm domain-containing protein. (133 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (83 aa)
	FNYG_10974	PAT1 domain-containing protein. (814 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (109 aa)
	FNYG_09721	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins. (1380 aa)
	FNYG_09270	Sm domain-containing protein. (90 aa)
	FNYG_09379	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (120 aa)
	FNYG_08541	Sm domain-containing protein. (79 aa)
	FNYG_05592	Uncharacterized protein. (267 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (169 aa)
	FNYG_01446	Uncharacterized protein. (219 aa)

Your Current Organism:

Fusarium nygamai

NCBI taxonomy Id: 42673
Other names: ATCC 58555, BBA 69862, CBS 749.97, DAOM 225148, F. nygamai, Gibberella nygamai, IMI 375354, NRRL 13448

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FNYG_01446	FNYG_05592	A0A2K0WSF4	A0A2K0WFS2	Uncharacterized protein.	Uncharacterized protein.	0.979
FNYG_01446	FNYG_08541	A0A2K0WSF4	A0A2K0W718	Uncharacterized protein.	Sm domain-containing protein.	0.842
FNYG_01446	FNYG_09270	A0A2K0WSF4	A0A2K0W541	Uncharacterized protein.	Sm domain-containing protein.	0.779
FNYG_01446	FNYG_09379	A0A2K0WSF4	A0A2K0W5G3	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.842
FNYG_01446	FNYG_09721	A0A2K0WSF4	A0A2K0W3W2	Uncharacterized protein.	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	0.994
FNYG_01446	FNYG_10974	A0A2K0WSF4	A0A2K0VZW6	Uncharacterized protein.	PAT1 domain-containing protein.	0.982
FNYG_01446	FNYG_12511	A0A2K0WSF4	A0A2K0VVS4	Uncharacterized protein.	Sm domain-containing protein.	0.855
FNYG_01446	LSM1	A0A2K0WSF4	A0A2K0WGJ1	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.882
FNYG_01446	LSM4	A0A2K0WSF4	A0A2K0W0R6	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.925
FNYG_01446	LSM5	A0A2K0WSF4	A0A2K0VX47	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.853
FNYG_05592	FNYG_01446	A0A2K0WFS2	A0A2K0WSF4	Uncharacterized protein.	Uncharacterized protein.	0.979
FNYG_05592	FNYG_08541	A0A2K0WFS2	A0A2K0W718	Uncharacterized protein.	Sm domain-containing protein.	0.875
FNYG_05592	FNYG_09270	A0A2K0WFS2	A0A2K0W541	Uncharacterized protein.	Sm domain-containing protein.	0.731
FNYG_05592	FNYG_09379	A0A2K0WFS2	A0A2K0W5G3	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.813
FNYG_05592	FNYG_09721	A0A2K0WFS2	A0A2K0W3W2	Uncharacterized protein.	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	0.956
FNYG_05592	FNYG_10974	A0A2K0WFS2	A0A2K0VZW6	Uncharacterized protein.	PAT1 domain-containing protein.	0.978
FNYG_05592	FNYG_12511	A0A2K0WFS2	A0A2K0VVS4	Uncharacterized protein.	Sm domain-containing protein.	0.810
FNYG_05592	LSM1	A0A2K0WFS2	A0A2K0WGJ1	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.918
FNYG_05592	LSM4	A0A2K0WFS2	A0A2K0W0R6	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.905
FNYG_05592	LSM5	A0A2K0WFS2	A0A2K0VX47	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.764