(17 nodes) Pre-replicative complex, and Mitotic DNA replication preinitiation complex assembly network (Fusarium nygamai)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FNYG_14359	DNA helicase; Belongs to the MCM family. (879 aa)
	FNYG_11716	ORC_WH_C domain-containing protein. (717 aa)
	FNYG_11592	DNA helicase; Belongs to the MCM family. (889 aa)
	FNYG_11209	DNA helicase; Belongs to the MCM family. (957 aa)
	FNYG_10411	PHD-type domain-containing protein. (765 aa)
	FNYG_09701	DNA helicase; Belongs to the MCM family. (721 aa)
	FNYG_09224	DNA helicase; Belongs to the MCM family. (1006 aa)
	FNYG_09047	Cell division control protein; Belongs to the CDC6/cdc18 family. (603 aa)
	FNYG_08509	Protein kinase domain-containing protein. (490 aa)
	FNYG_07549	Uncharacterized protein. (379 aa)
	FNYG_06330	BAH domain-containing protein. (721 aa)
	MCM7	DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (814 aa)
	FNYG_02311	Uncharacterized protein. (577 aa)
	FNYG_00577	Uncharacterized protein. (853 aa)
	FNYG_00654	Zf-primase domain-containing protein. (770 aa)
	FNYG_00927	DBF4-type domain-containing protein. (629 aa)
	FNYG_00543	AAA_16 domain-containing protein. (472 aa)

Your Current Organism:

Fusarium nygamai

NCBI taxonomy Id: 42673
Other names: ATCC 58555, BBA 69862, CBS 749.97, DAOM 225148, F. nygamai, Gibberella nygamai, IMI 375354, NRRL 13448

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FNYG_00543	FNYG_00577	A0A2K0WVL4	A0A2K0WTA5	AAA_16 domain-containing protein.	Uncharacterized protein.	0.962
FNYG_00543	FNYG_00654	A0A2K0WVL4	A0A2K0WTJ0	AAA_16 domain-containing protein.	Zf-primase domain-containing protein.	0.903
FNYG_00543	FNYG_00927	A0A2K0WVL4	A0A2K0WUB6	AAA_16 domain-containing protein.	DBF4-type domain-containing protein.	0.902
FNYG_00543	FNYG_02311	A0A2K0WVL4	A0A2K0WQY5	AAA_16 domain-containing protein.	Uncharacterized protein.	0.999
FNYG_00543	FNYG_06330	A0A2K0WVL4	A0A2K0WD98	AAA_16 domain-containing protein.	BAH domain-containing protein.	0.998
FNYG_00543	FNYG_07549	A0A2K0WVL4	A0A2K0WA49	AAA_16 domain-containing protein.	Uncharacterized protein.	0.998
FNYG_00543	FNYG_08509	A0A2K0WVL4	A0A2K0W7E6	AAA_16 domain-containing protein.	Protein kinase domain-containing protein.	0.945
FNYG_00543	FNYG_09047	A0A2K0WVL4	A0A2K0W5K4	AAA_16 domain-containing protein.	Cell division control protein; Belongs to the CDC6/cdc18 family.	0.997
FNYG_00543	FNYG_09224	A0A2K0WVL4	A0A2K0W4Z7	AAA_16 domain-containing protein.	DNA helicase; Belongs to the MCM family.	0.992
FNYG_00543	FNYG_09701	A0A2K0WVL4	A0A2K0W3U5	AAA_16 domain-containing protein.	DNA helicase; Belongs to the MCM family.	0.998
FNYG_00543	FNYG_10411	A0A2K0WVL4	A0A2K0W250	AAA_16 domain-containing protein.	PHD-type domain-containing protein.	0.999
FNYG_00543	FNYG_11209	A0A2K0WVL4	A0A2K0VZE9	AAA_16 domain-containing protein.	DNA helicase; Belongs to the MCM family.	0.995
FNYG_00543	FNYG_11592	A0A2K0WVL4	A0A2K0VYK3	AAA_16 domain-containing protein.	DNA helicase; Belongs to the MCM family.	0.997
FNYG_00543	FNYG_11716	A0A2K0WVL4	A0A2K0VY25	AAA_16 domain-containing protein.	ORC_WH_C domain-containing protein.	0.998
FNYG_00543	FNYG_14359	A0A2K0WVL4	A0A2K0UT41	AAA_16 domain-containing protein.	DNA helicase; Belongs to the MCM family.	0.996
FNYG_00543	MCM7	A0A2K0WVL4	A0A2K0WLC1	AAA_16 domain-containing protein.	DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...]	0.990
FNYG_00577	FNYG_00543	A0A2K0WTA5	A0A2K0WVL4	Uncharacterized protein.	AAA_16 domain-containing protein.	0.962
FNYG_00577	FNYG_00654	A0A2K0WTA5	A0A2K0WTJ0	Uncharacterized protein.	Zf-primase domain-containing protein.	0.997
FNYG_00577	FNYG_00927	A0A2K0WTA5	A0A2K0WUB6	Uncharacterized protein.	DBF4-type domain-containing protein.	0.887
FNYG_00577	FNYG_02311	A0A2K0WTA5	A0A2K0WQY5	Uncharacterized protein.	Uncharacterized protein.	0.968