(7 nodes) Transcription factor TFIID complex network (Fusarium nygamai)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FNYG_13737	TAF domain-containing protein. (463 aa)
	FNYG_13072	PHD domain-containing protein. (718 aa)
	FNYG_09077	TAFII55_N domain-containing protein. (493 aa)
	FNYG_08872	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...] (188 aa)
	FNYG_08720	TAFII28 domain-containing protein. (320 aa)
	FNYG_00767	Uncharacterized protein. (1499 aa)
	FNYG_00966	DUF3591 domain-containing protein. (1300 aa)

Your Current Organism:

Fusarium nygamai

NCBI taxonomy Id: 42673
Other names: ATCC 58555, BBA 69862, CBS 749.97, DAOM 225148, F. nygamai, Gibberella nygamai, IMI 375354, NRRL 13448

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FNYG_00767	FNYG_00966	A0A2K0WTU6	A0A2K0WUG5	Uncharacterized protein.	DUF3591 domain-containing protein.	0.998
FNYG_00767	FNYG_08720	A0A2K0WTU6	A0A2K0W6V1	Uncharacterized protein.	TAFII28 domain-containing protein.	0.998
FNYG_00767	FNYG_08872	A0A2K0WTU6	A0A2K0W686	Uncharacterized protein.	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]	0.997
FNYG_00767	FNYG_09077	A0A2K0WTU6	A0A2K0W5N8	Uncharacterized protein.	TAFII55_N domain-containing protein.	0.998
FNYG_00767	FNYG_13072	A0A2K0WTU6	A0A2K0VUB3	Uncharacterized protein.	PHD domain-containing protein.	0.998
FNYG_00767	FNYG_13737	A0A2K0WTU6	A0A2K0UUX6	Uncharacterized protein.	TAF domain-containing protein.	0.998
FNYG_00966	FNYG_00767	A0A2K0WUG5	A0A2K0WTU6	DUF3591 domain-containing protein.	Uncharacterized protein.	0.998
FNYG_00966	FNYG_08720	A0A2K0WUG5	A0A2K0W6V1	DUF3591 domain-containing protein.	TAFII28 domain-containing protein.	0.998
FNYG_00966	FNYG_08872	A0A2K0WUG5	A0A2K0W686	DUF3591 domain-containing protein.	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]	0.997
FNYG_00966	FNYG_09077	A0A2K0WUG5	A0A2K0W5N8	DUF3591 domain-containing protein.	TAFII55_N domain-containing protein.	0.998
FNYG_00966	FNYG_13072	A0A2K0WUG5	A0A2K0VUB3	DUF3591 domain-containing protein.	PHD domain-containing protein.	0.998
FNYG_00966	FNYG_13737	A0A2K0WUG5	A0A2K0UUX6	DUF3591 domain-containing protein.	TAF domain-containing protein.	0.998
FNYG_08720	FNYG_00767	A0A2K0W6V1	A0A2K0WTU6	TAFII28 domain-containing protein.	Uncharacterized protein.	0.998
FNYG_08720	FNYG_00966	A0A2K0W6V1	A0A2K0WUG5	TAFII28 domain-containing protein.	DUF3591 domain-containing protein.	0.998
FNYG_08720	FNYG_08872	A0A2K0W6V1	A0A2K0W686	TAFII28 domain-containing protein.	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]	0.997
FNYG_08720	FNYG_09077	A0A2K0W6V1	A0A2K0W5N8	TAFII28 domain-containing protein.	TAFII55_N domain-containing protein.	0.996
FNYG_08720	FNYG_13072	A0A2K0W6V1	A0A2K0VUB3	TAFII28 domain-containing protein.	PHD domain-containing protein.	0.999
FNYG_08720	FNYG_13737	A0A2K0W6V1	A0A2K0UUX6	TAFII28 domain-containing protein.	TAF domain-containing protein.	0.998
FNYG_08872	FNYG_00767	A0A2K0W686	A0A2K0WTU6	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]	Uncharacterized protein.	0.997
FNYG_08872	FNYG_00966	A0A2K0W686	A0A2K0WUG5	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]	DUF3591 domain-containing protein.	0.997