(5 nodes) RNA polymerase II, core complex network (Fusarium nygamai)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FNYG_13418	RPOL4c domain-containing protein. (158 aa)
	FNYG_12050	RNA_pol_L_2 domain-containing protein. (143 aa)
	FNYG_11912	Uncharacterized protein. (72 aa)
	FNYG_11724	Uncharacterized protein. (172 aa)
	FNYG_04460	RPOL9 domain-containing protein. (186 aa)

Your Current Organism:

Fusarium nygamai

NCBI taxonomy Id: 42673
Other names: ATCC 58555, BBA 69862, CBS 749.97, DAOM 225148, F. nygamai, Gibberella nygamai, IMI 375354, NRRL 13448

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FNYG_04460	FNYG_11724	A0A2K0WJ16	A0A2K0VY33	RPOL9 domain-containing protein.	Uncharacterized protein.	0.997
FNYG_04460	FNYG_11912	A0A2K0WJ16	A0A2K0VXN5	RPOL9 domain-containing protein.	Uncharacterized protein.	0.998
FNYG_04460	FNYG_12050	A0A2K0WJ16	A0A2K0VX56	RPOL9 domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.999
FNYG_04460	FNYG_13418	A0A2K0WJ16	A0A2K0VTC8	RPOL9 domain-containing protein.	RPOL4c domain-containing protein.	0.997
FNYG_11724	FNYG_04460	A0A2K0VY33	A0A2K0WJ16	Uncharacterized protein.	RPOL9 domain-containing protein.	0.997
FNYG_11724	FNYG_11912	A0A2K0VY33	A0A2K0VXN5	Uncharacterized protein.	Uncharacterized protein.	0.997
FNYG_11724	FNYG_12050	A0A2K0VY33	A0A2K0VX56	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.998
FNYG_11724	FNYG_13418	A0A2K0VY33	A0A2K0VTC8	Uncharacterized protein.	RPOL4c domain-containing protein.	0.997
FNYG_11912	FNYG_04460	A0A2K0VXN5	A0A2K0WJ16	Uncharacterized protein.	RPOL9 domain-containing protein.	0.998
FNYG_11912	FNYG_11724	A0A2K0VXN5	A0A2K0VY33	Uncharacterized protein.	Uncharacterized protein.	0.997
FNYG_11912	FNYG_12050	A0A2K0VXN5	A0A2K0VX56	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.998
FNYG_11912	FNYG_13418	A0A2K0VXN5	A0A2K0VTC8	Uncharacterized protein.	RPOL4c domain-containing protein.	0.997
FNYG_12050	FNYG_04460	A0A2K0VX56	A0A2K0WJ16	RNA_pol_L_2 domain-containing protein.	RPOL9 domain-containing protein.	0.999
FNYG_12050	FNYG_11724	A0A2K0VX56	A0A2K0VY33	RNA_pol_L_2 domain-containing protein.	Uncharacterized protein.	0.998
FNYG_12050	FNYG_11912	A0A2K0VX56	A0A2K0VXN5	RNA_pol_L_2 domain-containing protein.	Uncharacterized protein.	0.998
FNYG_12050	FNYG_13418	A0A2K0VX56	A0A2K0VTC8	RNA_pol_L_2 domain-containing protein.	RPOL4c domain-containing protein.	0.998
FNYG_13418	FNYG_04460	A0A2K0VTC8	A0A2K0WJ16	RPOL4c domain-containing protein.	RPOL9 domain-containing protein.	0.997
FNYG_13418	FNYG_11724	A0A2K0VTC8	A0A2K0VY33	RPOL4c domain-containing protein.	Uncharacterized protein.	0.997
FNYG_13418	FNYG_11912	A0A2K0VTC8	A0A2K0VXN5	RPOL4c domain-containing protein.	Uncharacterized protein.	0.997
FNYG_13418	FNYG_12050	A0A2K0VTC8	A0A2K0VX56	RPOL4c domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.998