5 items (Fusarium nygamai) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FNYG_10407	CDC73_C domain-containing protein. (409 aa)
	FNYG_09211	Uncharacterized protein. (406 aa)
	FNYG_08396	Uncharacterized protein. (475 aa)
	FNYG_06955	Plus3 domain-containing protein. (596 aa)
	FNYG_06458	Uncharacterized protein. (1214 aa)

Your Current Organism:

Fusarium nygamai

NCBI taxonomy Id: 42673
Other names: ATCC 58555, BBA 69862, CBS 749.97, DAOM 225148, F. nygamai, Gibberella nygamai, IMI 375354, NRRL 13448

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FNYG_06458	FNYG_06955	A0A2K0WD71	A0A2K0WBF4	Uncharacterized protein.	Plus3 domain-containing protein.	0.996
FNYG_06458	FNYG_08396	A0A2K0WD71	A0A2K0W828	Uncharacterized protein.	Uncharacterized protein.	0.998
FNYG_06458	FNYG_09211	A0A2K0WD71	A0A2K0W4Y2	Uncharacterized protein.	Uncharacterized protein.	0.998
FNYG_06458	FNYG_10407	A0A2K0WD71	A0A2K0W253	Uncharacterized protein.	CDC73_C domain-containing protein.	0.998
FNYG_06955	FNYG_06458	A0A2K0WBF4	A0A2K0WD71	Plus3 domain-containing protein.	Uncharacterized protein.	0.996
FNYG_06955	FNYG_08396	A0A2K0WBF4	A0A2K0W828	Plus3 domain-containing protein.	Uncharacterized protein.	0.995
FNYG_06955	FNYG_09211	A0A2K0WBF4	A0A2K0W4Y2	Plus3 domain-containing protein.	Uncharacterized protein.	0.996
FNYG_06955	FNYG_10407	A0A2K0WBF4	A0A2K0W253	Plus3 domain-containing protein.	CDC73_C domain-containing protein.	0.995
FNYG_08396	FNYG_06458	A0A2K0W828	A0A2K0WD71	Uncharacterized protein.	Uncharacterized protein.	0.998
FNYG_08396	FNYG_06955	A0A2K0W828	A0A2K0WBF4	Uncharacterized protein.	Plus3 domain-containing protein.	0.995
FNYG_08396	FNYG_09211	A0A2K0W828	A0A2K0W4Y2	Uncharacterized protein.	Uncharacterized protein.	0.988
FNYG_08396	FNYG_10407	A0A2K0W828	A0A2K0W253	Uncharacterized protein.	CDC73_C domain-containing protein.	0.999
FNYG_09211	FNYG_06458	A0A2K0W4Y2	A0A2K0WD71	Uncharacterized protein.	Uncharacterized protein.	0.998
FNYG_09211	FNYG_06955	A0A2K0W4Y2	A0A2K0WBF4	Uncharacterized protein.	Plus3 domain-containing protein.	0.996
FNYG_09211	FNYG_08396	A0A2K0W4Y2	A0A2K0W828	Uncharacterized protein.	Uncharacterized protein.	0.988
FNYG_09211	FNYG_10407	A0A2K0W4Y2	A0A2K0W253	Uncharacterized protein.	CDC73_C domain-containing protein.	0.998
FNYG_10407	FNYG_06458	A0A2K0W253	A0A2K0WD71	CDC73_C domain-containing protein.	Uncharacterized protein.	0.998
FNYG_10407	FNYG_06955	A0A2K0W253	A0A2K0WBF4	CDC73_C domain-containing protein.	Plus3 domain-containing protein.	0.995
FNYG_10407	FNYG_08396	A0A2K0W253	A0A2K0W828	CDC73_C domain-containing protein.	Uncharacterized protein.	0.999
FNYG_10407	FNYG_09211	A0A2K0W253	A0A2K0W4Y2	CDC73_C domain-containing protein.	Uncharacterized protein.	0.998