(5 nodes) RNA polymerase I complex network (Fusarium nygamai)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FNYG_11065	Uncharacterized protein. (236 aa)
	FNYG_08263	Uncharacterized protein. (154 aa)
	FNYG_06445	RNA_pol_L_2 domain-containing protein. (147 aa)
	FNYG_03626	Uncharacterized protein. (80 aa)
	FNYG_03237	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (148 aa)

Your Current Organism:

Fusarium nygamai

NCBI taxonomy Id: 42673
Other names: ATCC 58555, BBA 69862, CBS 749.97, DAOM 225148, F. nygamai, Gibberella nygamai, IMI 375354, NRRL 13448

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FNYG_03237	FNYG_03626	A0A2K0WN32	A0A2K0WM13	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Uncharacterized protein.	0.998
FNYG_03237	FNYG_06445	A0A2K0WN32	A0A2K0WD76	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	RNA_pol_L_2 domain-containing protein.	0.999
FNYG_03237	FNYG_08263	A0A2K0WN32	A0A2K0W7Q7	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Uncharacterized protein.	0.999
FNYG_03237	FNYG_11065	A0A2K0WN32	A0A2K0W070	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Uncharacterized protein.	0.999
FNYG_03626	FNYG_03237	A0A2K0WM13	A0A2K0WN32	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.998
FNYG_03626	FNYG_06445	A0A2K0WM13	A0A2K0WD76	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.999
FNYG_03626	FNYG_08263	A0A2K0WM13	A0A2K0W7Q7	Uncharacterized protein.	Uncharacterized protein.	0.999
FNYG_03626	FNYG_11065	A0A2K0WM13	A0A2K0W070	Uncharacterized protein.	Uncharacterized protein.	0.999
FNYG_06445	FNYG_03237	A0A2K0WD76	A0A2K0WN32	RNA_pol_L_2 domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
FNYG_06445	FNYG_03626	A0A2K0WD76	A0A2K0WM13	RNA_pol_L_2 domain-containing protein.	Uncharacterized protein.	0.999
FNYG_06445	FNYG_08263	A0A2K0WD76	A0A2K0W7Q7	RNA_pol_L_2 domain-containing protein.	Uncharacterized protein.	0.999
FNYG_06445	FNYG_11065	A0A2K0WD76	A0A2K0W070	RNA_pol_L_2 domain-containing protein.	Uncharacterized protein.	0.999
FNYG_08263	FNYG_03237	A0A2K0W7Q7	A0A2K0WN32	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
FNYG_08263	FNYG_03626	A0A2K0W7Q7	A0A2K0WM13	Uncharacterized protein.	Uncharacterized protein.	0.999
FNYG_08263	FNYG_06445	A0A2K0W7Q7	A0A2K0WD76	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.999
FNYG_08263	FNYG_11065	A0A2K0W7Q7	A0A2K0W070	Uncharacterized protein.	Uncharacterized protein.	0.999
FNYG_11065	FNYG_03237	A0A2K0W070	A0A2K0WN32	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
FNYG_11065	FNYG_03626	A0A2K0W070	A0A2K0WM13	Uncharacterized protein.	Uncharacterized protein.	0.999
FNYG_11065	FNYG_06445	A0A2K0W070	A0A2K0WD76	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.999
FNYG_11065	FNYG_08263	A0A2K0W070	A0A2K0W7Q7	Uncharacterized protein.	Uncharacterized protein.	0.999