15 items (Fusarium nygamai) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FNYG_14399	Uncharacterized protein. (244 aa)
	FNYG_13200	Uncharacterized protein. (524 aa)
	FNYG_13071	HMG box domain-containing protein. (490 aa)
	FNYG_11204	PRK domain-containing protein. (456 aa)
	FNYG_11059	Phytocyanin domain-containing protein. (213 aa)
	FNYG_10797	Uncharacterized protein. (199 aa)
	FNYG_10347	C2H2-type domain-containing protein. (971 aa)
	FNYG_08489	Uncharacterized protein. (185 aa)
	FNYG_06454	Fork-head domain-containing protein. (773 aa)
	FNYG_05204	Isochorismatase domain-containing protein. (193 aa)
	FNYG_05023	Uncharacterized protein. (617 aa)
	FNYG_03107	Uncharacterized protein. (228 aa)
	FNYG_02194	ASXH domain-containing protein. (307 aa)
	FNYG_02246	HMG box domain-containing protein. (673 aa)
	MAT1-1-3	Mating type protein MAT1-1-3. (201 aa)

Your Current Organism:

Fusarium nygamai

NCBI taxonomy Id: 42673
Other names: ATCC 58555, BBA 69862, CBS 749.97, DAOM 225148, F. nygamai, Gibberella nygamai, IMI 375354, NRRL 13448

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FNYG_02194	FNYG_05023	A0A2K0WQK4	A0A2K0WI87	ASXH domain-containing protein.	Uncharacterized protein.	0.741
FNYG_02246	FNYG_03107	A0A2K0WQR0	A0A2K0WMR0	HMG box domain-containing protein.	Uncharacterized protein.	0.687
FNYG_02246	FNYG_05023	A0A2K0WQR0	A0A2K0WI87	HMG box domain-containing protein.	Uncharacterized protein.	0.525
FNYG_02246	FNYG_08489	A0A2K0WQR0	A0A2K0W7C7	HMG box domain-containing protein.	Uncharacterized protein.	0.694
FNYG_02246	FNYG_10797	A0A2K0WQR0	A0A2K0W0Y2	HMG box domain-containing protein.	Uncharacterized protein.	0.694
FNYG_02246	FNYG_11059	A0A2K0WQR0	A0A2K0W046	HMG box domain-containing protein.	Phytocyanin domain-containing protein.	0.694
FNYG_02246	FNYG_11204	A0A2K0WQR0	A0A2K0VZE5	HMG box domain-containing protein.	PRK domain-containing protein.	0.687
FNYG_02246	FNYG_13071	A0A2K0WQR0	A0A2K0VUB8	HMG box domain-containing protein.	HMG box domain-containing protein.	0.676
FNYG_02246	FNYG_14399	A0A2K0WQR0	A0A2K0USX5	HMG box domain-containing protein.	Uncharacterized protein.	0.687
FNYG_03107	FNYG_02246	A0A2K0WMR0	A0A2K0WQR0	Uncharacterized protein.	HMG box domain-containing protein.	0.687
FNYG_03107	FNYG_08489	A0A2K0WMR0	A0A2K0W7C7	Uncharacterized protein.	Uncharacterized protein.	0.900
FNYG_03107	FNYG_10797	A0A2K0WMR0	A0A2K0W0Y2	Uncharacterized protein.	Uncharacterized protein.	0.900
FNYG_03107	FNYG_11059	A0A2K0WMR0	A0A2K0W046	Uncharacterized protein.	Phytocyanin domain-containing protein.	0.900
FNYG_03107	FNYG_11204	A0A2K0WMR0	A0A2K0VZE5	Uncharacterized protein.	PRK domain-containing protein.	0.817
FNYG_03107	FNYG_13071	A0A2K0WMR0	A0A2K0VUB8	Uncharacterized protein.	HMG box domain-containing protein.	0.695
FNYG_03107	FNYG_13200	A0A2K0WMR0	A0A2K0VTX5	Uncharacterized protein.	Uncharacterized protein.	0.687
FNYG_03107	FNYG_14399	A0A2K0WMR0	A0A2K0USX5	Uncharacterized protein.	Uncharacterized protein.	0.841
FNYG_03107	MAT1-1-3	A0A2K0WMR0	G3G2E6	Uncharacterized protein.	Mating type protein MAT1-1-3.	0.687
FNYG_05023	FNYG_02194	A0A2K0WI87	A0A2K0WQK4	Uncharacterized protein.	ASXH domain-containing protein.	0.741
FNYG_05023	FNYG_02246	A0A2K0WI87	A0A2K0WQR0	Uncharacterized protein.	HMG box domain-containing protein.	0.525