16 items (Fusarium nygamai) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FNYG_14221	Uncharacterized protein. (380 aa)
	FNYG_13978	Uncharacterized protein. (336 aa)
	FNYG_13342	Uncharacterized protein. (296 aa)
	FNYG_13018	Uncharacterized protein. (499 aa)
	FNYG_12164	Uncharacterized protein. (479 aa)
	FNYG_10408	Uncharacterized protein. (720 aa)
	FNYG_09499	Uncharacterized protein. (354 aa)
	FNYG_09204	G_PROTEIN_RECEP_F2_4 domain-containing protein. (489 aa)
	FNYG_08880	Uncharacterized protein. (202 aa)
	FNYG_08534	Uncharacterized protein. (334 aa)
	FNYG_08337	G protein gamma domain-containing protein. (93 aa)
	FNYG_06848	Uncharacterized protein. (424 aa)
	FNYG_04869	Uncharacterized protein. (353 aa)
	FNYG_04945	Uncharacterized protein. (507 aa)
	FNYG_03055	WD_REPEATS_REGION domain-containing protein. (359 aa)
	FNYG_00476	Uncharacterized protein. (382 aa)

Your Current Organism:

Fusarium nygamai

NCBI taxonomy Id: 42673
Other names: ATCC 58555, BBA 69862, CBS 749.97, DAOM 225148, F. nygamai, Gibberella nygamai, IMI 375354, NRRL 13448

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FNYG_00476	FNYG_03055	A0A2K0WVE5	A0A2K0WMJ0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.936
FNYG_00476	FNYG_04869	A0A2K0WVE5	A0A2K0WHT8	Uncharacterized protein.	Uncharacterized protein.	0.819
FNYG_00476	FNYG_06848	A0A2K0WVE5	A0A2K0WBV3	Uncharacterized protein.	Uncharacterized protein.	0.819
FNYG_00476	FNYG_08534	A0A2K0WVE5	A0A2K0W731	Uncharacterized protein.	Uncharacterized protein.	0.819
FNYG_00476	FNYG_08880	A0A2K0WVE5	A0A2K0W6A0	Uncharacterized protein.	Uncharacterized protein.	0.787
FNYG_00476	FNYG_09204	A0A2K0WVE5	A0A2K0W4X8	Uncharacterized protein.	G_PROTEIN_RECEP_F2_4 domain-containing protein.	0.614
FNYG_00476	FNYG_09499	A0A2K0WVE5	A0A2K0W4K2	Uncharacterized protein.	Uncharacterized protein.	0.819
FNYG_00476	FNYG_13342	A0A2K0WVE5	A0A2K0VTI9	Uncharacterized protein.	Uncharacterized protein.	0.819
FNYG_00476	FNYG_13978	A0A2K0WVE5	A0A2K0UU47	Uncharacterized protein.	Uncharacterized protein.	0.819
FNYG_00476	FNYG_14221	A0A2K0WVE5	A0A2K0UTN1	Uncharacterized protein.	Uncharacterized protein.	0.637
FNYG_03055	FNYG_00476	A0A2K0WMJ0	A0A2K0WVE5	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.936
FNYG_03055	FNYG_04869	A0A2K0WMJ0	A0A2K0WHT8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.975
FNYG_03055	FNYG_04945	A0A2K0WMJ0	A0A2K0WI20	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.981
FNYG_03055	FNYG_06848	A0A2K0WMJ0	A0A2K0WBV3	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.966
FNYG_03055	FNYG_08337	A0A2K0WMJ0	A0A2K0W807	WD_REPEATS_REGION domain-containing protein.	G protein gamma domain-containing protein.	0.993
FNYG_03055	FNYG_08534	A0A2K0WMJ0	A0A2K0W731	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.943
FNYG_03055	FNYG_09204	A0A2K0WMJ0	A0A2K0W4X8	WD_REPEATS_REGION domain-containing protein.	G_PROTEIN_RECEP_F2_4 domain-containing protein.	0.844
FNYG_03055	FNYG_09499	A0A2K0WMJ0	A0A2K0W4K2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.970
FNYG_03055	FNYG_10408	A0A2K0WMJ0	A0A2K0W239	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.953
FNYG_03055	FNYG_12164	A0A2K0WMJ0	A0A2K0VWZ3	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.953