(27 nodes) SAGA complex, and Fusaric acid resistance protein-like network (Fusarium nygamai)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FNYG_15578	Uncharacterized protein. (403 aa)
	FNYG_15376	Uncharacterized protein. (306 aa)
	FNYG_14829	Uncharacterized protein. (427 aa)
	FNYG_14423	Uncharacterized protein. (936 aa)
	FNYG_14156	Uncharacterized protein. (386 aa)
	FNYG_13475	Uncharacterized protein. (636 aa)
	FNYG_12711	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (3842 aa)
	FNYG_12731	USP domain-containing protein; Belongs to the peptidase C19 family. (707 aa)
	FNYG_11766	Uncharacterized protein. (1045 aa)
	FNYG_10300	Uncharacterized protein. (320 aa)
	FNYG_10301	Uncharacterized protein. (1163 aa)
	FNYG_09748	Uncharacterized protein. (1073 aa)
	FNYG_09356	Ubiquitin carboxyl-terminal hydrolase. (621 aa)
	FNYG_07707	WD_REPEATS_REGION domain-containing protein. (687 aa)
	FNYG_06947	Uncharacterized protein. (482 aa)
	FNYG_06729	Uncharacterized protein. (396 aa)
	FNYG_05549	Uncharacterized protein. (385 aa)
	FNYG_04730	Transcriptional adapter 2; Functions as component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and ADA. SAGA is involved in RNA polymerase II-dependent transcriptional regulation. (511 aa)
	FNYG_05014	SCA7 domain-containing protein. (410 aa)
	FNYG_04142	Uncharacterized protein. (372 aa)
	FNYG_03822	Ubiquitinyl hydrolase 1. (514 aa)
	FNYG_03157	AA_TRNA_LIGASE_II domain-containing protein. (472 aa)
	FNYG_02752	Uncharacterized protein. (309 aa)
	FNYG_02346	Uncharacterized protein. (397 aa)
	FNYG_02103	Bromo domain-containing protein. (1143 aa)
	FNYG_00664	ArAE_2_N domain-containing protein. (987 aa)
	FNYG_00360	SGF29 C-terminal domain-containing protein. (454 aa)

Your Current Organism:

Fusarium nygamai

NCBI taxonomy Id: 42673
Other names: ATCC 58555, BBA 69862, CBS 749.97, DAOM 225148, F. nygamai, Gibberella nygamai, IMI 375354, NRRL 13448

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FNYG_00360	FNYG_00664	A0A2K0WV18	A0A2K0WTK0	SGF29 C-terminal domain-containing protein.	ArAE_2_N domain-containing protein.	0.798
FNYG_00360	FNYG_02103	A0A2K0WV18	A0A2K0WQD7	SGF29 C-terminal domain-containing protein.	Bromo domain-containing protein.	0.988
FNYG_00360	FNYG_02346	A0A2K0WV18	A0A2K0WPX0	SGF29 C-terminal domain-containing protein.	Uncharacterized protein.	0.894
FNYG_00360	FNYG_02752	A0A2K0WV18	A0A2K0WP73	SGF29 C-terminal domain-containing protein.	Uncharacterized protein.	0.972
FNYG_00360	FNYG_03157	A0A2K0WV18	A0A2K0WMV5	SGF29 C-terminal domain-containing protein.	AA_TRNA_LIGASE_II domain-containing protein.	0.918
FNYG_00360	FNYG_03822	A0A2K0WV18	A0A2K0WJZ4	SGF29 C-terminal domain-containing protein.	Ubiquitinyl hydrolase 1.	0.995
FNYG_00360	FNYG_04142	A0A2K0WV18	A0A2K0WJI1	SGF29 C-terminal domain-containing protein.	Uncharacterized protein.	0.982
FNYG_00360	FNYG_04730	A0A2K0WV18	A0A2K0WHF0	SGF29 C-terminal domain-containing protein.	Transcriptional adapter 2; Functions as component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and ADA. SAGA is involved in RNA polymerase II-dependent transcriptional regulation.	0.994
FNYG_00360	FNYG_05014	A0A2K0WV18	A0A2K0WI94	SGF29 C-terminal domain-containing protein.	SCA7 domain-containing protein.	0.986
FNYG_00360	FNYG_05549	A0A2K0WV18	A0A2K0WFN4	SGF29 C-terminal domain-containing protein.	Uncharacterized protein.	0.907
FNYG_00360	FNYG_06729	A0A2K0WV18	A0A2K0WCL4	SGF29 C-terminal domain-containing protein.	Uncharacterized protein.	0.907
FNYG_00360	FNYG_06947	A0A2K0WV18	A0A2K0WBI0	SGF29 C-terminal domain-containing protein.	Uncharacterized protein.	0.979
FNYG_00360	FNYG_07707	A0A2K0WV18	A0A2K0W985	SGF29 C-terminal domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.878
FNYG_00360	FNYG_09356	A0A2K0WV18	A0A2K0W5B3	SGF29 C-terminal domain-containing protein.	Ubiquitin carboxyl-terminal hydrolase.	0.940
FNYG_00360	FNYG_09748	A0A2K0WV18	A0A2K0W3J2	SGF29 C-terminal domain-containing protein.	Uncharacterized protein.	0.752
FNYG_00360	FNYG_10300	A0A2K0WV18	A0A2K0W1T5	SGF29 C-terminal domain-containing protein.	Uncharacterized protein.	0.972
FNYG_00360	FNYG_10301	A0A2K0WV18	A0A2K0W1T8	SGF29 C-terminal domain-containing protein.	Uncharacterized protein.	0.798
FNYG_00360	FNYG_11766	A0A2K0WV18	A0A2K0VXU0	SGF29 C-terminal domain-containing protein.	Uncharacterized protein.	0.798
FNYG_00360	FNYG_12711	A0A2K0WV18	A0A2K0VVC7	SGF29 C-terminal domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.995
FNYG_00360	FNYG_12731	A0A2K0WV18	A0A2K0VVF4	SGF29 C-terminal domain-containing protein.	USP domain-containing protein; Belongs to the peptidase C19 family.	0.940