(39 nodes) Cytosolic large ribosomal subunit network (Fusarium nygamai)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FNYG_14364	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (168 aa)
	FNYG_13375	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family. (173 aa)
	FNYG_13346	Uncharacterized protein. (135 aa)
	FNYG_12058	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (313 aa)
	FNYG_11795	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (224 aa)
	FNYG_11743	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (105 aa)
	FNYG_11531	Ribosomal_L23eN domain-containing protein. (153 aa)
	FNYG_11576	Uncharacterized protein. (275 aa)
	FNYG_11540	Ribosomal_L28e domain-containing protein. (159 aa)
	FNYG_11350	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (264 aa)
	FNYG_09744	Ribosomal_L14e domain-containing protein. (147 aa)
	FNYG_09486	Uncharacterized protein. (124 aa)
	FNYG_09057	Uncharacterized protein. (165 aa)
	FNYG_09063	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (200 aa)
	FNYG_08997	Uncharacterized protein. (193 aa)
	FNYG_08656	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family. (79 aa)
	FNYG_08510	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family. (149 aa)
	FNYG_07500	60S ribosomal protein L20; Belongs to the eukaryotic ribosomal protein eL20 family. (176 aa)
	FNYG_07525	Uncharacterized protein. (122 aa)
	FNYG_06769	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (139 aa)
	FNYG_06429	Uncharacterized protein. (51 aa)
	FNYG_06439	Ribosomal_L2_C domain-containing protein. (288 aa)
	FNYG_06385	Uncharacterized protein. (109 aa)
	FNYG_06204	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family. (109 aa)
	FNYG_05933	Ribosomal_L16 domain-containing protein. (221 aa)
	FNYG_05934	Ribosomal_L7Ae domain-containing protein. (110 aa)
	FNYG_04795	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family. (110 aa)
	FNYG_05035	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (65 aa)
	FNYG_04549	Uncharacterized protein. (160 aa)
	FNYG_04228	Uncharacterized protein. (160 aa)
	FNYG_04235	Uncharacterized protein. (93 aa)
	FNYG_03682	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (203 aa)
	FNYG_03088	Uncharacterized protein. (130 aa)
	FNYG_03101	Uncharacterized protein. (116 aa)
	FNYG_03087	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (142 aa)
	FNYG_02106	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (391 aa)
	FNYG_01881	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (195 aa)
	FNYG_01438	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family. (202 aa)
	FNYG_00331	Uncharacterized protein. (92 aa)

Your Current Organism:

Fusarium nygamai

NCBI taxonomy Id: 42673
Other names: ATCC 58555, BBA 69862, CBS 749.97, DAOM 225148, F. nygamai, Gibberella nygamai, IMI 375354, NRRL 13448

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FNYG_00331	FNYG_01438	A0A2K0WVN0	A0A2K0WSH5	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	0.999
FNYG_00331	FNYG_01881	A0A2K0WVN0	A0A2K0WR76	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.998
FNYG_00331	FNYG_02106	A0A2K0WVN0	A0A2K0WQC2	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.998
FNYG_00331	FNYG_03087	A0A2K0WVN0	A0A2K0WMP8	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.998
FNYG_00331	FNYG_03088	A0A2K0WVN0	A0A2K0WML9	Uncharacterized protein.	Uncharacterized protein.	0.998
FNYG_00331	FNYG_03101	A0A2K0WVN0	A0A2K0WMN4	Uncharacterized protein.	Uncharacterized protein.	0.998
FNYG_00331	FNYG_03682	A0A2K0WVN0	A0A2K0WM68	Uncharacterized protein.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.999
FNYG_00331	FNYG_04228	A0A2K0WVN0	A0A2K0WJR8	Uncharacterized protein.	Uncharacterized protein.	0.999
FNYG_00331	FNYG_04235	A0A2K0WVN0	A0A2K0WJR9	Uncharacterized protein.	Uncharacterized protein.	0.998
FNYG_00331	FNYG_04549	A0A2K0WVN0	A0A2K0WIH9	Uncharacterized protein.	Uncharacterized protein.	0.999
FNYG_00331	FNYG_04795	A0A2K0WVN0	A0A2K0WHK9	Uncharacterized protein.	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.996
FNYG_00331	FNYG_05035	A0A2K0WVN0	A0A2K0WIB0	Uncharacterized protein.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.998
FNYG_00331	FNYG_05933	A0A2K0WVN0	A0A2K0WET9	Uncharacterized protein.	Ribosomal_L16 domain-containing protein.	0.998
FNYG_00331	FNYG_05934	A0A2K0WVN0	A0A2K0WEV8	Uncharacterized protein.	Ribosomal_L7Ae domain-containing protein.	0.998
FNYG_00331	FNYG_06204	A0A2K0WVN0	A0A2K0WE90	Uncharacterized protein.	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.996
FNYG_00331	FNYG_06385	A0A2K0WVN0	A0A2K0WDE1	Uncharacterized protein.	Uncharacterized protein.	0.998
FNYG_00331	FNYG_06429	A0A2K0WVN0	A0A2K0WD45	Uncharacterized protein.	Uncharacterized protein.	0.998
FNYG_00331	FNYG_06439	A0A2K0WVN0	A0A2K0WD56	Uncharacterized protein.	Ribosomal_L2_C domain-containing protein.	0.998
FNYG_00331	FNYG_06769	A0A2K0WVN0	A0A2K0WCP5	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	0.998
FNYG_00331	FNYG_07500	A0A2K0WVN0	A0A2K0W9U5	Uncharacterized protein.	60S ribosomal protein L20; Belongs to the eukaryotic ribosomal protein eL20 family.	0.998