(4 nodes) RNA polymerase III type 3 promoter sequence-specific DNA binding network (Fusarium nygamai)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FNYG_14779	HTH myb-type domain-containing protein. (176 aa)
	FNYG_15188	HTH myb-type domain-containing protein. (176 aa)
	FNYG_08431	Uncharacterized protein. (293 aa)
	FNYG_12868	Uncharacterized protein. (753 aa)

Your Current Organism:

Fusarium nygamai

NCBI taxonomy Id: 42673
Other names: ATCC 58555, BBA 69862, CBS 749.97, DAOM 225148, F. nygamai, Gibberella nygamai, IMI 375354, NRRL 13448

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FNYG_08431	FNYG_12868	A0A2K0W7F9	A0A2K0VUF7	Uncharacterized protein.	Uncharacterized protein.	0.630
FNYG_12868	FNYG_08431	A0A2K0VUF7	A0A2K0W7F9	Uncharacterized protein.	Uncharacterized protein.	0.630
FNYG_12868	FNYG_14779	A0A2K0VUF7	A0A2K0UQ41	Uncharacterized protein.	HTH myb-type domain-containing protein.	0.630
FNYG_12868	FNYG_15188	A0A2K0VUF7	A0A2K0UIX3	Uncharacterized protein.	HTH myb-type domain-containing protein.	0.630
FNYG_14779	FNYG_12868	A0A2K0UQ41	A0A2K0VUF7	HTH myb-type domain-containing protein.	Uncharacterized protein.	0.630
FNYG_15188	FNYG_12868	A0A2K0UIX3	A0A2K0VUF7	HTH myb-type domain-containing protein.	Uncharacterized protein.	0.630