(10 nodes) RNA polymerase II general transcription initiation factor activity network (Fusarium nygamai)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FNYG_03226	Uncharacterized protein. (665 aa)
	FNYG_04282	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (304 aa)
	FNYG_04904	CBFD_NFYB_HMF domain-containing protein. (328 aa)
	FNYG_05820	Uncharacterized protein. (254 aa)
	FNYG_09137	TFIIB-type domain-containing protein. (346 aa)
	FNYG_09490	Uncharacterized protein. (71 aa)
	FNYG_11798	Uncharacterized protein. (306 aa)
	FNYG_13411	Uncharacterized protein. (382 aa)
	FNYG_13737	TAF domain-containing protein. (463 aa)
	FNYG_00966	DUF3591 domain-containing protein. (1300 aa)

Your Current Organism:

Fusarium nygamai

NCBI taxonomy Id: 42673
Other names: ATCC 58555, BBA 69862, CBS 749.97, DAOM 225148, F. nygamai, Gibberella nygamai, IMI 375354, NRRL 13448

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FNYG_00966	FNYG_03226	A0A2K0WUG5	A0A2K0WN15	DUF3591 domain-containing protein.	Uncharacterized protein.	0.972
FNYG_00966	FNYG_04282	A0A2K0WUG5	A0A2K0WJW5	DUF3591 domain-containing protein.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.904
FNYG_00966	FNYG_05820	A0A2K0WUG5	A0A2K0WEZ8	DUF3591 domain-containing protein.	Uncharacterized protein.	0.997
FNYG_00966	FNYG_09137	A0A2K0WUG5	A0A2K0W5V4	DUF3591 domain-containing protein.	TFIIB-type domain-containing protein.	0.983
FNYG_00966	FNYG_11798	A0A2K0WUG5	A0A2K0VY16	DUF3591 domain-containing protein.	Uncharacterized protein.	0.991
FNYG_00966	FNYG_13737	A0A2K0WUG5	A0A2K0UUX6	DUF3591 domain-containing protein.	TAF domain-containing protein.	0.998
FNYG_03226	FNYG_00966	A0A2K0WN15	A0A2K0WUG5	Uncharacterized protein.	DUF3591 domain-containing protein.	0.972
FNYG_03226	FNYG_04282	A0A2K0WN15	A0A2K0WJW5	Uncharacterized protein.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.991
FNYG_03226	FNYG_05820	A0A2K0WN15	A0A2K0WEZ8	Uncharacterized protein.	Uncharacterized protein.	0.987
FNYG_03226	FNYG_09137	A0A2K0WN15	A0A2K0W5V4	Uncharacterized protein.	TFIIB-type domain-containing protein.	0.991
FNYG_03226	FNYG_09490	A0A2K0WN15	A0A2K0W4I7	Uncharacterized protein.	Uncharacterized protein.	0.888
FNYG_03226	FNYG_11798	A0A2K0WN15	A0A2K0VY16	Uncharacterized protein.	Uncharacterized protein.	0.891
FNYG_03226	FNYG_13411	A0A2K0WN15	A0A2K0VTC9	Uncharacterized protein.	Uncharacterized protein.	0.678
FNYG_03226	FNYG_13737	A0A2K0WN15	A0A2K0UUX6	Uncharacterized protein.	TAF domain-containing protein.	0.903
FNYG_04282	FNYG_00966	A0A2K0WJW5	A0A2K0WUG5	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	DUF3591 domain-containing protein.	0.904
FNYG_04282	FNYG_03226	A0A2K0WJW5	A0A2K0WN15	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	Uncharacterized protein.	0.991
FNYG_04282	FNYG_05820	A0A2K0WJW5	A0A2K0WEZ8	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	Uncharacterized protein.	0.987
FNYG_04282	FNYG_09137	A0A2K0WJW5	A0A2K0W5V4	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	TFIIB-type domain-containing protein.	0.988
FNYG_04282	FNYG_09490	A0A2K0WJW5	A0A2K0W4I7	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	Uncharacterized protein.	0.986
FNYG_04282	FNYG_11798	A0A2K0WJW5	A0A2K0VY16	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	Uncharacterized protein.	0.962