(32 nodes) Protein deubiquitination network (Fusarium nygamai)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FNYG_07802	Uncharacterized protein. (355 aa)
	FNYG_08288	Uncharacterized protein. (516 aa)
	FNYG_08568	DUF862 domain-containing protein. (249 aa)
	FNYG_08672	Uncharacterized protein. (1675 aa)
	FNYG_08876	MINDY_DUB domain-containing protein. (837 aa)
	FNYG_09356	Ubiquitin carboxyl-terminal hydrolase. (621 aa)
	FNYG_09540	Uncharacterized protein. (953 aa)
	FNYG_09459	OTU domain-containing protein. (315 aa)
	FNYG_11389	HET domain-containing protein. (907 aa)
	FNYG_11612	Ubiquitin carboxyl-terminal hydrolase. (774 aa)
	FNYG_11736	Ubiquitin carboxyl-terminal hydrolase. (732 aa)
	FNYG_12501	Ubiquitin carboxyl-terminal hydrolase. (563 aa)
	FNYG_12582	Uncharacterized protein; Belongs to the peptidase C19 family. (1182 aa)
	FNYG_12731	USP domain-containing protein; Belongs to the peptidase C19 family. (707 aa)
	FNYG_12707	USP domain-containing protein; Belongs to the peptidase C19 family. (1155 aa)
	FNYG_14402	Uncharacterized protein. (446 aa)
	FNYG_14537	Uncharacterized protein. (1056 aa)
	FNYG_14710	Uncharacterized protein. (178 aa)
	FNYG_15334	Uncharacterized protein. (44 aa)
	FNYG_00509	WD_REPEATS_REGION domain-containing protein. (1067 aa)
	FNYG_01873	Ubiquitin carboxyl-terminal hydrolase. (323 aa)
	FNYG_02031	Ubiquitin carboxyl-terminal hydrolase. (478 aa)
	FNYG_03822	Ubiquitinyl hydrolase 1. (514 aa)
	FNYG_03812	OTU domain-containing protein. (368 aa)
	FNYG_04142	Uncharacterized protein. (372 aa)
	FNYG_04944	USP domain-containing protein; Belongs to the peptidase C19 family. (2555 aa)
	FNYG_05295	MPN domain-containing protein. (469 aa)
	FNYG_06279	Ubiquitin carboxyl-terminal hydrolase. (925 aa)
	FNYG_06420	Uncharacterized protein; Belongs to the peptidase C19 family. (1661 aa)
	FNYG_06796	MPN domain-containing protein. (337 aa)
	FNYG_06795	Uncharacterized protein. (399 aa)
	FNYG_07404	Uncharacterized protein. (447 aa)

Your Current Organism:

Fusarium nygamai

NCBI taxonomy Id: 42673
Other names: ATCC 58555, BBA 69862, CBS 749.97, DAOM 225148, F. nygamai, Gibberella nygamai, IMI 375354, NRRL 13448

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FNYG_00509	FNYG_11736	A0A2K0WVH7	A0A2K0VY39	WD_REPEATS_REGION domain-containing protein.	Ubiquitin carboxyl-terminal hydrolase.	0.994
FNYG_00509	FNYG_12582	A0A2K0WVH7	A0A2K0VVL1	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the peptidase C19 family.	0.472
FNYG_00509	FNYG_14402	A0A2K0WVH7	A0A2K0USY7	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.457
FNYG_00509	FNYG_14537	A0A2K0WVH7	A0A2K0USN4	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.710
FNYG_01873	FNYG_05295	A0A2K0WR82	A0A2K0WG64	Ubiquitin carboxyl-terminal hydrolase.	MPN domain-containing protein.	0.842
FNYG_01873	FNYG_06795	A0A2K0WR82	A0A2K0WCS8	Ubiquitin carboxyl-terminal hydrolase.	Uncharacterized protein.	0.971
FNYG_01873	FNYG_06796	A0A2K0WR82	A0A2K0WCT7	Ubiquitin carboxyl-terminal hydrolase.	MPN domain-containing protein.	0.971
FNYG_01873	FNYG_11612	A0A2K0WR82	A0A2K0VYL9	Ubiquitin carboxyl-terminal hydrolase.	Ubiquitin carboxyl-terminal hydrolase.	0.430
FNYG_01873	FNYG_12501	A0A2K0WR82	A0A2K0VVR4	Ubiquitin carboxyl-terminal hydrolase.	Ubiquitin carboxyl-terminal hydrolase.	0.946
FNYG_01873	FNYG_14537	A0A2K0WR82	A0A2K0USN4	Ubiquitin carboxyl-terminal hydrolase.	Uncharacterized protein.	0.407
FNYG_02031	FNYG_05295	A0A2K0WQ61	A0A2K0WG64	Ubiquitin carboxyl-terminal hydrolase.	MPN domain-containing protein.	0.842
FNYG_02031	FNYG_06795	A0A2K0WQ61	A0A2K0WCS8	Ubiquitin carboxyl-terminal hydrolase.	Uncharacterized protein.	0.897
FNYG_02031	FNYG_06796	A0A2K0WQ61	A0A2K0WCT7	Ubiquitin carboxyl-terminal hydrolase.	MPN domain-containing protein.	0.897
FNYG_02031	FNYG_11612	A0A2K0WQ61	A0A2K0VYL9	Ubiquitin carboxyl-terminal hydrolase.	Ubiquitin carboxyl-terminal hydrolase.	0.428
FNYG_02031	FNYG_12501	A0A2K0WQ61	A0A2K0VVR4	Ubiquitin carboxyl-terminal hydrolase.	Ubiquitin carboxyl-terminal hydrolase.	0.770
FNYG_02031	FNYG_14537	A0A2K0WQ61	A0A2K0USN4	Ubiquitin carboxyl-terminal hydrolase.	Uncharacterized protein.	0.405
FNYG_03812	FNYG_03822	A0A2K0WJY4	A0A2K0WJZ4	OTU domain-containing protein.	Ubiquitinyl hydrolase 1.	0.465
FNYG_03812	FNYG_06279	A0A2K0WJY4	A0A2K0WEH8	OTU domain-containing protein.	Ubiquitin carboxyl-terminal hydrolase.	0.485
FNYG_03812	FNYG_06420	A0A2K0WJY4	A0A2K0WD12	OTU domain-containing protein.	Uncharacterized protein; Belongs to the peptidase C19 family.	0.440
FNYG_03812	FNYG_09459	A0A2K0WJY4	A0A2K0W4G4	OTU domain-containing protein.	OTU domain-containing protein.	0.513