(9 nodes) RSC-type complex network (Fusarium nygamai)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FNYG_00678	Uncharacterized protein. (938 aa)
	FNYG_13405	Uncharacterized protein. (702 aa)
	FNYG_13464	Uncharacterized protein. (682 aa)
	FNYG_12457	Uncharacterized protein. (361 aa)
	FNYG_10352	Uncharacterized protein; Belongs to the actin family. (784 aa)
	FNYG_12174	Zn(2)-C6 fungal-type domain-containing protein. (699 aa)
	FNYG_09149	Uncharacterized protein. (580 aa)
	FNYG_08956	Uncharacterized protein. (522 aa)
	FNYG_03811	Uncharacterized protein. (599 aa)

Your Current Organism:

Fusarium nygamai

NCBI taxonomy Id: 42673
Other names: ATCC 58555, BBA 69862, CBS 749.97, DAOM 225148, F. nygamai, Gibberella nygamai, IMI 375354, NRRL 13448

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FNYG_00678	FNYG_03811	A0A2K0WTK5	A0A2K0WJX4	Uncharacterized protein.	Uncharacterized protein.	0.951
FNYG_00678	FNYG_08956	A0A2K0WTK5	A0A2K0W5U6	Uncharacterized protein.	Uncharacterized protein.	0.964
FNYG_00678	FNYG_09149	A0A2K0WTK5	A0A2K0W4S5	Uncharacterized protein.	Uncharacterized protein.	0.771
FNYG_00678	FNYG_10352	A0A2K0WTK5	A0A2K0W1Z3	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.965
FNYG_00678	FNYG_12174	A0A2K0WTK5	A0A2K0VX03	Uncharacterized protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.868
FNYG_00678	FNYG_12457	A0A2K0WTK5	A0A2K0VWL3	Uncharacterized protein.	Uncharacterized protein.	0.868
FNYG_00678	FNYG_13405	A0A2K0WTK5	A0A2K0VTC2	Uncharacterized protein.	Uncharacterized protein.	0.508
FNYG_00678	FNYG_13464	A0A2K0WTK5	A0A2K0V9M3	Uncharacterized protein.	Uncharacterized protein.	0.937
FNYG_03811	FNYG_00678	A0A2K0WJX4	A0A2K0WTK5	Uncharacterized protein.	Uncharacterized protein.	0.951
FNYG_03811	FNYG_08956	A0A2K0WJX4	A0A2K0W5U6	Uncharacterized protein.	Uncharacterized protein.	0.948
FNYG_03811	FNYG_09149	A0A2K0WJX4	A0A2K0W4S5	Uncharacterized protein.	Uncharacterized protein.	0.978
FNYG_03811	FNYG_10352	A0A2K0WJX4	A0A2K0W1Z3	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.971
FNYG_03811	FNYG_12174	A0A2K0WJX4	A0A2K0VX03	Uncharacterized protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.615
FNYG_03811	FNYG_12457	A0A2K0WJX4	A0A2K0VWL3	Uncharacterized protein.	Uncharacterized protein.	0.615
FNYG_08956	FNYG_00678	A0A2K0W5U6	A0A2K0WTK5	Uncharacterized protein.	Uncharacterized protein.	0.964
FNYG_08956	FNYG_03811	A0A2K0W5U6	A0A2K0WJX4	Uncharacterized protein.	Uncharacterized protein.	0.948
FNYG_08956	FNYG_09149	A0A2K0W5U6	A0A2K0W4S5	Uncharacterized protein.	Uncharacterized protein.	0.717
FNYG_08956	FNYG_10352	A0A2K0W5U6	A0A2K0W1Z3	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.964
FNYG_08956	FNYG_12174	A0A2K0W5U6	A0A2K0VX03	Uncharacterized protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.614
FNYG_08956	FNYG_12457	A0A2K0W5U6	A0A2K0VWL3	Uncharacterized protein.	Uncharacterized protein.	0.614