(18 nodes) TBP-class protein binding network (Fusarium nygamai)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FNYG_00335	Uncharacterized protein. (1895 aa)
	FNYG_00966	DUF3591 domain-containing protein. (1300 aa)
	FNYG_01771	TIP120 domain-containing protein. (1356 aa)
	FNYG_02913	Zn(2)-C6 fungal-type domain-containing protein. (733 aa)
	FNYG_03859	Zn(2)-C6 fungal-type domain-containing protein. (714 aa)
	FNYG_07707	WD_REPEATS_REGION domain-containing protein. (687 aa)
	FNYG_09137	TFIIB-type domain-containing protein. (346 aa)
	FNYG_10757	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (115 aa)
	FNYG_10910	TFIID_20kDa domain-containing protein. (687 aa)
	FNYG_11050	Uncharacterized protein. (380 aa)
	FNYG_12868	Uncharacterized protein. (753 aa)
	FNYG_14665	Zn(2)-C6 fungal-type domain-containing protein. (403 aa)
	FNYG_15930	Uncharacterized protein. (269 aa)
	FNYG_15931	Uncharacterized protein. (317 aa)
	FNYG_15453	Fungal_trans domain-containing protein. (451 aa)
	FNYG_14829	Uncharacterized protein. (427 aa)
	FNYG_14666	Uncharacterized protein. (269 aa)
	FNYG_14334	Uncharacterized protein. (370 aa)

Your Current Organism:

Fusarium nygamai

NCBI taxonomy Id: 42673
Other names: ATCC 58555, BBA 69862, CBS 749.97, DAOM 225148, F. nygamai, Gibberella nygamai, IMI 375354, NRRL 13448

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FNYG_00335	FNYG_00966	A0A2K0WVN4	A0A2K0WUG5	Uncharacterized protein.	DUF3591 domain-containing protein.	0.537
FNYG_00335	FNYG_02913	A0A2K0WVN4	A0A2K0WPM3	Uncharacterized protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.628
FNYG_00335	FNYG_03859	A0A2K0WVN4	A0A2K0WK29	Uncharacterized protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.628
FNYG_00335	FNYG_09137	A0A2K0WVN4	A0A2K0W5V4	Uncharacterized protein.	TFIIB-type domain-containing protein.	0.643
FNYG_00335	FNYG_10910	A0A2K0WVN4	A0A2K0W0N0	Uncharacterized protein.	TFIID_20kDa domain-containing protein.	0.488
FNYG_00335	FNYG_14665	A0A2K0WVN4	A0A2K0US66	Uncharacterized protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.628
FNYG_00335	FNYG_14666	A0A2K0WVN4	A0A2K0US62	Uncharacterized protein.	Uncharacterized protein.	0.628
FNYG_00335	FNYG_14829	A0A2K0WVN4	A0A2K0UPY9	Uncharacterized protein.	Uncharacterized protein.	0.488
FNYG_00335	FNYG_15453	A0A2K0WVN4	A0A2K0UD67	Uncharacterized protein.	Fungal_trans domain-containing protein.	0.628
FNYG_00335	FNYG_15930	A0A2K0WVN4	A0A2K0TZP8	Uncharacterized protein.	Uncharacterized protein.	0.628
FNYG_00335	FNYG_15931	A0A2K0WVN4	A0A2K0TZR7	Uncharacterized protein.	Uncharacterized protein.	0.628
FNYG_00966	FNYG_00335	A0A2K0WUG5	A0A2K0WVN4	DUF3591 domain-containing protein.	Uncharacterized protein.	0.537
FNYG_00966	FNYG_09137	A0A2K0WUG5	A0A2K0W5V4	DUF3591 domain-containing protein.	TFIIB-type domain-containing protein.	0.983
FNYG_00966	FNYG_10757	A0A2K0WUG5	A0A2K0W0T7	DUF3591 domain-containing protein.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.930
FNYG_00966	FNYG_10910	A0A2K0WUG5	A0A2K0W0N0	DUF3591 domain-containing protein.	TFIID_20kDa domain-containing protein.	0.986
FNYG_00966	FNYG_11050	A0A2K0WUG5	A0A2K0W034	DUF3591 domain-containing protein.	Uncharacterized protein.	0.928
FNYG_00966	FNYG_14829	A0A2K0WUG5	A0A2K0UPY9	DUF3591 domain-containing protein.	Uncharacterized protein.	0.979
FNYG_02913	FNYG_00335	A0A2K0WPM3	A0A2K0WVN4	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein.	0.628
FNYG_03859	FNYG_00335	A0A2K0WK29	A0A2K0WVN4	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein.	0.628
FNYG_07707	FNYG_10910	A0A2K0W985	A0A2K0W0N0	WD_REPEATS_REGION domain-containing protein.	TFIID_20kDa domain-containing protein.	0.810