(83 nodes) Cytosolic ribosome network (Fusarium nygamai)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FNYG_04235	Uncharacterized protein. (93 aa)
	FNYG_03328	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	FNYG_03479	Uncharacterized protein. (1012 aa)
	FNYG_03480	Ribos_L4_asso_C domain-containing protein. (352 aa)
	FNYG_03523	Uncharacterized protein. (354 aa)
	FNYG_03545	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (206 aa)
	FNYG_03546	Uncharacterized protein. (190 aa)
	FNYG_03547	Uncharacterized protein. (367 aa)
	FNYG_03682	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (203 aa)
	FNYG_03088	Uncharacterized protein. (130 aa)
	FNYG_03101	Uncharacterized protein. (116 aa)
	FNYG_03087	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (142 aa)
	FNYG_02416	Uncharacterized protein. (101 aa)
	FNYG_02039	Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner. (674 aa)
	FNYG_02106	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (391 aa)
	FNYG_02127	S10_plectin domain-containing protein. (165 aa)
	FNYG_01813	Uncharacterized protein. (546 aa)
	FNYG_01881	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (195 aa)
	FNYG_01953	Ribosomal_L7Ae domain-containing protein. (295 aa)
	FNYG_01438	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family. (202 aa)
	FNYG_00645	Uncharacterized protein. (750 aa)
	FNYG_01156	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (62 aa)
	FNYG_05330	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (117 aa)
	FNYG_00331	Uncharacterized protein. (92 aa)
	FNYG_05288	Uncharacterized protein. (204 aa)
	FNYG_05934	Ribosomal_L7Ae domain-containing protein. (110 aa)
	FNYG_05933	Ribosomal_L16 domain-containing protein. (221 aa)
	FNYG_06300	Uncharacterized protein. (791 aa)
	FNYG_06204	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family. (109 aa)
	FNYG_06048	Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family. (135 aa)
	FNYG_06401	Uncharacterized protein. (68 aa)
	FNYG_06385	Uncharacterized protein. (109 aa)
	FNYG_06439	Ribosomal_L2_C domain-containing protein. (288 aa)
	FNYG_06432	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (217 aa)
	FNYG_06774	40S ribosomal protein S21; Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Has a physiological role leading to 18S rRNA stability. (87 aa)
	FNYG_06769	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (139 aa)
	FNYG_07061	Ribosomal_L18_c domain-containing protein. (311 aa)
	FNYG_07531	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (257 aa)
	FNYG_07525	Uncharacterized protein. (122 aa)
	FNYG_07500	60S ribosomal protein L20; Belongs to the eukaryotic ribosomal protein eL20 family. (176 aa)
	FNYG_08399	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (154 aa)
	FNYG_08398	Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family. (130 aa)
	FNYG_08510	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family. (149 aa)
	FNYG_08656	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family. (79 aa)
	FNYG_08952	Mago-bind domain-containing protein. (192 aa)
	FNYG_09063	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (200 aa)
	FNYG_09057	Uncharacterized protein. (165 aa)
	FNYG_09339	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (152 aa)
	FNYG_09486	Uncharacterized protein. (124 aa)
	FNYG_09744	Ribosomal_L14e domain-containing protein. (147 aa)
	FNYG_10974	PAT1 domain-containing protein. (814 aa)
	FNYG_11186	Uncharacterized protein. (150 aa)
	FNYG_11185	Uncharacterized protein. (372 aa)
	FNYG_11350	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (264 aa)
	FNYG_11540	Ribosomal_L28e domain-containing protein. (159 aa)
	FNYG_11575	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	FNYG_11576	Uncharacterized protein. (275 aa)
	FNYG_11531	Ribosomal_L23eN domain-containing protein. (153 aa)
	FNYG_11743	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (105 aa)
	FNYG_11795	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (224 aa)
	FNYG_11799	WD_REPEATS_REGION domain-containing protein. (316 aa)
	FNYG_11803	Ribosomal_L18e/L15P domain-containing protein. (210 aa)
	FNYG_12058	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (313 aa)
	FNYG_13182	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family. (145 aa)
	FNYG_13346	Uncharacterized protein. (135 aa)
	FNYG_13327	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (153 aa)
	FNYG_13328	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family. (213 aa)
	FNYG_13375	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family. (173 aa)
	FNYG_13541	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family. (173 aa)
	FNYG_13542	Uncharacterized protein. (306 aa)
	FNYG_14364	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (168 aa)
	RPS1	40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family. (256 aa)
	RPS0	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (292 aa)
	FNYG_05118	KOW domain-containing protein. (136 aa)
	FNYG_04795	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family. (110 aa)
	FNYG_04908	Ribosomal_S10 domain-containing protein. (116 aa)
	FNYG_04971	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family. (260 aa)
	FNYG_05035	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (65 aa)
	FNYG_04549	Uncharacterized protein. (160 aa)
	FNYG_04550	S4 RNA-binding domain-containing protein. (191 aa)
	FNYG_04526	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (203 aa)
	FNYG_04192	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (261 aa)
	FNYG_04228	Uncharacterized protein. (160 aa)

Your Current Organism:

Fusarium nygamai

NCBI taxonomy Id: 42673
Other names: ATCC 58555, BBA 69862, CBS 749.97, DAOM 225148, F. nygamai, Gibberella nygamai, IMI 375354, NRRL 13448

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FNYG_00331	FNYG_01156	A0A2K0WVN0	A0A2K0WUZ9	Uncharacterized protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.997
FNYG_00331	FNYG_01438	A0A2K0WVN0	A0A2K0WSH5	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	0.999
FNYG_00331	FNYG_01813	A0A2K0WVN0	A0A2K0WR22	Uncharacterized protein.	Uncharacterized protein.	0.988
FNYG_00331	FNYG_01881	A0A2K0WVN0	A0A2K0WR76	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.998
FNYG_00331	FNYG_01953	A0A2K0WVN0	A0A2K0WRF7	Uncharacterized protein.	Ribosomal_L7Ae domain-containing protein.	0.998
FNYG_00331	FNYG_02106	A0A2K0WVN0	A0A2K0WQC2	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.998
FNYG_00331	FNYG_02127	A0A2K0WVN0	A0A2K0WQF5	Uncharacterized protein.	S10_plectin domain-containing protein.	0.998
FNYG_00331	FNYG_02416	A0A2K0WVN0	A0A2K0WPR5	Uncharacterized protein.	Uncharacterized protein.	0.998
FNYG_00331	FNYG_03087	A0A2K0WVN0	A0A2K0WMP8	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.998
FNYG_00331	FNYG_03088	A0A2K0WVN0	A0A2K0WML9	Uncharacterized protein.	Uncharacterized protein.	0.998
FNYG_00331	FNYG_03101	A0A2K0WVN0	A0A2K0WMN4	Uncharacterized protein.	Uncharacterized protein.	0.998
FNYG_00331	FNYG_03328	A0A2K0WVN0	A0A2K0WL52	Uncharacterized protein.	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	0.998
FNYG_00331	FNYG_03479	A0A2K0WVN0	A0A2K0WLK3	Uncharacterized protein.	Uncharacterized protein.	0.988
FNYG_00331	FNYG_03480	A0A2K0WVN0	A0A2K0WLL1	Uncharacterized protein.	Ribos_L4_asso_C domain-containing protein.	0.988
FNYG_00331	FNYG_03523	A0A2K0WVN0	A0A2K0WLQ1	Uncharacterized protein.	Uncharacterized protein.	0.986
FNYG_00331	FNYG_03545	A0A2K0WVN0	A0A2K0WLS3	Uncharacterized protein.	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	0.978
FNYG_00331	FNYG_03546	A0A2K0WVN0	A0A2K0WLS4	Uncharacterized protein.	Uncharacterized protein.	0.978
FNYG_00331	FNYG_03547	A0A2K0WVN0	A0A2K0WLS6	Uncharacterized protein.	Uncharacterized protein.	0.978
FNYG_00331	FNYG_03682	A0A2K0WVN0	A0A2K0WM68	Uncharacterized protein.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.999
FNYG_00331	FNYG_04192	A0A2K0WVN0	A0A2K0WJN0	Uncharacterized protein.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.998