(20 nodes) sno(s)RNA processing network (Fusarium nygamai)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FNYG_01006	RNase_PH domain-containing protein. (268 aa)
	FNYG_05022	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (635 aa)
	FNYG_04555	Uncharacterized protein. (329 aa)
	FNYG_04186	C3H1-type domain-containing protein. (1061 aa)
	FNYG_04261	Uncharacterized protein. (904 aa)
	FNYG_04257	Uncharacterized protein. (245 aa)
	FNYG_02037	HAD_SAK_1 domain-containing protein. (571 aa)
	FNYG_02163	RNase III domain-containing protein. (345 aa)
	FNYG_01880	Uncharacterized protein. (319 aa)
	FNYG_00745	Uncharacterized protein. (168 aa)
	FNYG_10905	HRDC domain-containing protein. (807 aa)
	FNYG_10760	Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Belongs to the eukaryotic/archaeal RNase P protein component 2 family. (177 aa)
	FNYG_14891	Uncharacterized protein. (263 aa)
	FNYG_14361	Uncharacterized protein. (1207 aa)
	FNYG_13384	RNase_PH domain-containing protein. (250 aa)
	FNYG_07595	Uncharacterized protein. (687 aa)
	FNYG_06955	Plus3 domain-containing protein. (596 aa)
	FNYG_06996	ECR1_N domain-containing protein. (331 aa)
	FNYG_11451	Uncharacterized protein. (185 aa)
	FNYG_05378	Nop domain-containing protein. (592 aa)

Your Current Organism:

Fusarium nygamai

NCBI taxonomy Id: 42673
Other names: ATCC 58555, BBA 69862, CBS 749.97, DAOM 225148, F. nygamai, Gibberella nygamai, IMI 375354, NRRL 13448

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FNYG_00745	FNYG_04261	A0A2K0WTV0	A0A2K0WJU2	Uncharacterized protein.	Uncharacterized protein.	0.998
FNYG_00745	FNYG_10760	A0A2K0WTV0	A0A2K0W0V0	Uncharacterized protein.	Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Belongs to the eukaryotic/archaeal RNase P protein component 2 family.	0.997
FNYG_01006	FNYG_01880	A0A2K0WUK2	A0A2K0WR90	RNase_PH domain-containing protein.	Uncharacterized protein.	0.922
FNYG_01006	FNYG_04186	A0A2K0WUK2	A0A2K0WJM1	RNase_PH domain-containing protein.	C3H1-type domain-containing protein.	0.454
FNYG_01006	FNYG_04257	A0A2K0WUK2	A0A2K0WJV8	RNase_PH domain-containing protein.	Uncharacterized protein.	0.999
FNYG_01006	FNYG_05378	A0A2K0WUK2	A0A2K0WGF5	RNase_PH domain-containing protein.	Nop domain-containing protein.	0.903
FNYG_01006	FNYG_06996	A0A2K0WUK2	A0A2K0WBJ9	RNase_PH domain-containing protein.	ECR1_N domain-containing protein.	0.999
FNYG_01006	FNYG_10905	A0A2K0WUK2	A0A2K0W0M0	RNase_PH domain-containing protein.	HRDC domain-containing protein.	0.444
FNYG_01006	FNYG_11451	A0A2K0WUK2	A0A2K0VZ51	RNase_PH domain-containing protein.	Uncharacterized protein.	0.986
FNYG_01006	FNYG_13384	A0A2K0WUK2	A0A2K0VTA2	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.999
FNYG_01880	FNYG_01006	A0A2K0WR90	A0A2K0WUK2	Uncharacterized protein.	RNase_PH domain-containing protein.	0.922
FNYG_01880	FNYG_02163	A0A2K0WR90	A0A2K0WQL1	Uncharacterized protein.	RNase III domain-containing protein.	0.414
FNYG_01880	FNYG_04257	A0A2K0WR90	A0A2K0WJV8	Uncharacterized protein.	Uncharacterized protein.	0.930
FNYG_01880	FNYG_05378	A0A2K0WR90	A0A2K0WGF5	Uncharacterized protein.	Nop domain-containing protein.	0.999
FNYG_01880	FNYG_06996	A0A2K0WR90	A0A2K0WBJ9	Uncharacterized protein.	ECR1_N domain-containing protein.	0.898
FNYG_01880	FNYG_11451	A0A2K0WR90	A0A2K0VZ51	Uncharacterized protein.	Uncharacterized protein.	0.920
FNYG_01880	FNYG_13384	A0A2K0WR90	A0A2K0VTA2	Uncharacterized protein.	RNase_PH domain-containing protein.	0.905
FNYG_02163	FNYG_01880	A0A2K0WQL1	A0A2K0WR90	RNase III domain-containing protein.	Uncharacterized protein.	0.414
FNYG_02163	FNYG_07595	A0A2K0WQL1	A0A2K0WA50	RNase III domain-containing protein.	Uncharacterized protein.	0.422
FNYG_04186	FNYG_01006	A0A2K0WJM1	A0A2K0WUK2	C3H1-type domain-containing protein.	RNase_PH domain-containing protein.	0.454