(138 nodes) Positive regulation of transcription by RNA polymerase II network (Fusarium nygamai)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FNYG_15931	Uncharacterized protein. (317 aa)
	FNYG_00006	HTH CENPB-type domain-containing protein. (170 aa)
	FNYG_00005	Uncharacterized protein. (185 aa)
	FNYG_00004	Uncharacterized protein. (182 aa)
	FNYG_00048	Uncharacterized protein. (359 aa)
	FNYG_00536	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. (736 aa)
	FNYG_00519	Uncharacterized protein. (754 aa)
	FNYG_00360	SGF29 C-terminal domain-containing protein. (454 aa)
	FNYG_01150	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function. (114 aa)
	FNYG_00967	MADS-box domain-containing protein. (652 aa)
	FNYG_00888	Uncharacterized protein. (362 aa)
	FNYG_00875	Abhydrolase_3 domain-containing protein. (477 aa)
	FNYG_00829	CBFD_NFYB_HMF domain-containing protein. (138 aa)
	FNYG_00686	Uncharacterized protein. (255 aa)
	FNYG_00604	Uncharacterized protein. (480 aa)
	FNYG_01478	Uncharacterized protein. (536 aa)
	FNYG_01565	Abhydrolase_3 domain-containing protein. (335 aa)
	FNYG_01950	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (1104 aa)
	FNYG_02206	BRCT domain-containing protein. (1173 aa)
	FNYG_02135	BHLH domain-containing protein. (442 aa)
	FNYG_02105	TPR_REGION domain-containing protein. (853 aa)
	FNYG_02033	Response regulatory domain-containing protein. (586 aa)
	FNYG_02035	CP2 domain-containing protein. (789 aa)
	FNYG_02913	Zn(2)-C6 fungal-type domain-containing protein. (733 aa)
	FNYG_03226	Uncharacterized protein. (665 aa)
	FNYG_03178	Uncharacterized protein. (792 aa)
	FNYG_03145	Zn(2)-C6 fungal-type domain-containing protein. (784 aa)
	FNYG_03060	Zn(2)-C6 fungal-type domain-containing protein. (1000 aa)
	FNYG_03530	Uncharacterized protein. (496 aa)
	FNYG_03450	NDT80 domain-containing protein. (604 aa)
	FNYG_03369	CBFD_NFYB_HMF domain-containing protein. (242 aa)
	FNYG_03346	Zn(2)-C6 fungal-type domain-containing protein. (665 aa)
	FNYG_03779	Uncharacterized protein. (443 aa)
	FNYG_03780	Abhydrolase_3 domain-containing protein. (348 aa)
	FNYG_03859	Zn(2)-C6 fungal-type domain-containing protein. (714 aa)
	FNYG_04265	Med12 domain-containing protein. (1519 aa)
	FNYG_04209	MADS-box domain-containing protein. (222 aa)
	FNYG_04193	Uncharacterized protein. (582 aa)
	FNYG_04532	Zn(2)-C6 fungal-type domain-containing protein. (555 aa)
	FNYG_04624	GCR1_C domain-containing protein. (384 aa)
	FNYG_05023	Uncharacterized protein. (617 aa)
	FNYG_04904	CBFD_NFYB_HMF domain-containing protein. (328 aa)
	FNYG_04764	Hist_deacetyl domain-containing protein. (1167 aa)
	FNYG_05212	Beta-lactamase domain-containing protein. (399 aa)
	FNYG_05544	BHLH domain-containing protein. (280 aa)
	FNYG_05514	Abhydrolase_3 domain-containing protein. (321 aa)
	FNYG_05792	NDT80 domain-containing protein. (529 aa)
	FNYG_05907	Uncharacterized protein. (1116 aa)
	FNYG_05904	E3 ubiquitin-protein ligase. (809 aa)
	FNYG_05874	PC4 domain-containing protein. (148 aa)
	FNYG_05866	HTH cro/C1-type domain-containing protein. (152 aa)
	FNYG_06190	Uncharacterized protein. (675 aa)
	FNYG_06392	Protein kinase domain-containing protein. (1005 aa)
	FNYG_06348	Fungal_trans domain-containing protein. (743 aa)
	FNYG_06360	BHLH domain-containing protein. (521 aa)
	FNYG_06332	Uncharacterized protein. (154 aa)
	FNYG_06349	Uncharacterized protein. (42 aa)
	FNYG_06454	Fork-head domain-containing protein. (773 aa)
	FNYG_06955	Plus3 domain-containing protein. (596 aa)
	FNYG_06943	Transcription elongation factor Spt6; Plays a role in maintenance of chromatin structure during RNA polymerase II transcription elongation thereby repressing transcription initiation from cryptic promoters. Mediates the reassembly of nucleosomes onto the promoters of at least a selected set of genes during repression; the nucleosome reassembly is essential for transcriptional repression; Belongs to the SPT6 family. (1406 aa)
	FNYG_07242	Abhydrolase_3 domain-containing protein. (353 aa)
	FNYG_07394	Abhydrolase_3 domain-containing protein. (328 aa)
	FNYG_07611	Uncharacterized protein. (119 aa)
	FNYG_07575	ANK_REP_REGION domain-containing protein. (1404 aa)
	FNYG_07533	Uncharacterized protein. (636 aa)
	FNYG_07459	Uncharacterized protein. (1500 aa)
	FNYG_07772	Beta-lactamase domain-containing protein. (410 aa)
	FNYG_07683	BZIP domain-containing protein. (503 aa)
	FNYG_08413	Uncharacterized protein. (1421 aa)
	FNYG_08323	Uncharacterized protein. (1602 aa)
	FNYG_08295	Uncharacterized protein. (717 aa)
	FNYG_08296	Uncharacterized protein. (351 aa)
	FNYG_08598	AAA domain-containing protein; Belongs to the AAA ATPase family. (459 aa)
	FNYG_08671	F-box domain-containing protein. (505 aa)
	FNYG_08899	AAA domain-containing protein; Belongs to the AAA ATPase family. (389 aa)
	FNYG_08992	YTH domain-containing protein. (637 aa)
	FNYG_08975	BHLH domain-containing protein. (492 aa)
	FNYG_09056	Uncharacterized protein. (632 aa)
	FNYG_09308	Uncharacterized protein. (898 aa)
	FNYG_09211	Uncharacterized protein. (406 aa)
	FNYG_09184	BHLH domain-containing protein. (644 aa)
	FNYG_09423	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (674 aa)
	FNYG_09630	Uncharacterized protein. (200 aa)
	FNYG_09715	Protein kinase domain-containing protein. (994 aa)
	FNYG_09741	Abhydrolase_3 domain-containing protein. (336 aa)
	FNYG_09752	Abhydrolase_3 domain-containing protein. (317 aa)
	FNYG_10139	BHLH domain-containing protein. (199 aa)
	FNYG_10122	Beta-lactamase domain-containing protein. (412 aa)
	FNYG_10223	Abhydrolase_3 domain-containing protein. (328 aa)
	FNYG_10407	CDC73_C domain-containing protein. (409 aa)
	FNYG_10328	Zn(2)-C6 fungal-type domain-containing protein. (956 aa)
	FNYG_10757	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (115 aa)
	FNYG_10855	Zn(2)-C6 fungal-type domain-containing protein. (747 aa)
	FNYG_11020	NDT80 domain-containing protein. (414 aa)
	FNYG_11594	Uncharacterized protein. (373 aa)
	FNYG_11606	Uncharacterized protein. (252 aa)
	FNYG_11582	CBFD_NFYB_HMF domain-containing protein. (271 aa)
	FNYG_11537	WD_REPEATS_REGION domain-containing protein. (613 aa)
	FNYG_11699	AAA domain-containing protein; Belongs to the AAA ATPase family. (391 aa)
	FNYG_11778	RING-type domain-containing protein. (645 aa)
	FNYG_13071	HMG box domain-containing protein. (490 aa)
	FNYG_13072	PHD domain-containing protein. (718 aa)
	FNYG_13094	Uncharacterized protein. (530 aa)
	FNYG_13221	AAA domain-containing protein; Belongs to the AAA ATPase family. (421 aa)
	FNYG_13338	Uncharacterized protein. (142 aa)
	FNYG_13365	Uncharacterized protein. (784 aa)
	FNYG_13437	Uncharacterized protein. (335 aa)
	FNYG_13496	Uncharacterized protein. (518 aa)
	FNYG_13466	BHLH domain-containing protein. (116 aa)
	FNYG_13602	GATA-type domain-containing protein. (516 aa)
	FNYG_13745	Uncharacterized protein. (546 aa)
	FNYG_13747	Uncharacterized protein. (175 aa)
	FNYG_13988	Abhydrolase_3 domain-containing protein. (354 aa)
	FNYG_14228	LisH domain-containing protein. (817 aa)
	FNYG_14242	TcA_TcB_BD domain-containing protein. (3594 aa)
	FNYG_14310	Uncharacterized protein. (739 aa)
	FNYG_14365	Uncharacterized protein. (1497 aa)
	FNYG_14366	Uncharacterized protein. (284 aa)
	FNYG_14339	Uncharacterized protein. (291 aa)
	FNYG_14332	PAS domain-containing protein. (659 aa)
	FNYG_14388	Uncharacterized protein. (639 aa)
	FNYG_14596	Uncharacterized protein. (450 aa)
	FNYG_14665	Zn(2)-C6 fungal-type domain-containing protein. (403 aa)
	FNYG_14666	Uncharacterized protein. (269 aa)
	FNYG_14793	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (413 aa)
	FNYG_14966	Uncharacterized protein. (786 aa)
	FNYG_15005	DDE-1 domain-containing protein. (381 aa)
	FNYG_15191	DDE-1 domain-containing protein. (414 aa)
	FNYG_15280	BHLH domain-containing protein. (263 aa)
	FNYG_15453	Fungal_trans domain-containing protein. (451 aa)
	FNYG_15502	DDE-1 domain-containing protein. (83 aa)
	FNYG_15613	BHLH domain-containing protein. (302 aa)
	FNYG_15641	Uncharacterized protein. (101 aa)
	FNYG_15728	HTH CENPB-type domain-containing protein. (392 aa)
	FNYG_15766	Uncharacterized protein. (1052 aa)
	FNYG_15831	Uncharacterized protein. (335 aa)
	FNYG_15877	Uncharacterized protein. (143 aa)
	FNYG_15930	Uncharacterized protein. (269 aa)

Your Current Organism:

Fusarium nygamai

NCBI taxonomy Id: 42673
Other names: ATCC 58555, BBA 69862, CBS 749.97, DAOM 225148, F. nygamai, Gibberella nygamai, IMI 375354, NRRL 13448

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FNYG_00004	FNYG_13466	A0A2K0WWJ4	A0A2K0V9P5	Uncharacterized protein.	BHLH domain-containing protein.	0.881
FNYG_00048	FNYG_02105	A0A2K0WWE0	A0A2K0WQB7	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.439
FNYG_00048	FNYG_05904	A0A2K0WWE0	A0A2K0WET4	Uncharacterized protein.	E3 ubiquitin-protein ligase.	0.404
FNYG_00048	FNYG_08295	A0A2K0WWE0	A0A2K0W7T3	Uncharacterized protein.	Uncharacterized protein.	0.522
FNYG_00048	FNYG_08992	A0A2K0WWE0	A0A2K0W5Y8	Uncharacterized protein.	YTH domain-containing protein.	0.581
FNYG_00048	FNYG_09630	A0A2K0WWE0	A0A2K0W413	Uncharacterized protein.	Uncharacterized protein.	0.439
FNYG_00360	FNYG_00829	A0A2K0WV18	A0A2K0WU14	SGF29 C-terminal domain-containing protein.	CBFD_NFYB_HMF domain-containing protein.	0.953
FNYG_00360	FNYG_02913	A0A2K0WV18	A0A2K0WPM3	SGF29 C-terminal domain-containing protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.745
FNYG_00360	FNYG_03859	A0A2K0WV18	A0A2K0WK29	SGF29 C-terminal domain-containing protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.745
FNYG_00360	FNYG_05907	A0A2K0WV18	A0A2K0WEU5	SGF29 C-terminal domain-containing protein.	Uncharacterized protein.	0.423
FNYG_00360	FNYG_11537	A0A2K0WV18	A0A2K0VYE1	SGF29 C-terminal domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.472
FNYG_00360	FNYG_13072	A0A2K0WV18	A0A2K0VUB3	SGF29 C-terminal domain-containing protein.	PHD domain-containing protein.	0.496
FNYG_00360	FNYG_14665	A0A2K0WV18	A0A2K0US66	SGF29 C-terminal domain-containing protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.745
FNYG_00360	FNYG_14666	A0A2K0WV18	A0A2K0US62	SGF29 C-terminal domain-containing protein.	Uncharacterized protein.	0.745
FNYG_00360	FNYG_15453	A0A2K0WV18	A0A2K0UD67	SGF29 C-terminal domain-containing protein.	Fungal_trans domain-containing protein.	0.745
FNYG_00360	FNYG_15766	A0A2K0WV18	A0A2K0U664	SGF29 C-terminal domain-containing protein.	Uncharacterized protein.	0.472
FNYG_00360	FNYG_15930	A0A2K0WV18	A0A2K0TZP8	SGF29 C-terminal domain-containing protein.	Uncharacterized protein.	0.745
FNYG_00360	FNYG_15931	A0A2K0WV18	A0A2K0TZR7	SGF29 C-terminal domain-containing protein.	Uncharacterized protein.	0.745
FNYG_00519	FNYG_14228	A0A2K0WVI3	A0A2K0UTN4	Uncharacterized protein.	LisH domain-containing protein.	0.574
FNYG_00536	FNYG_00604	A0A2K0WVK9	A0A2K0WTE2	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	Uncharacterized protein.	0.443