(25 nodes) ncRNA transcription network (Fusarium nygamai)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FNYG_10258	C2H2-type domain-containing protein. (1931 aa)
	FNYG_04773	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1232 aa)
	FNYG_06445	RNA_pol_L_2 domain-containing protein. (147 aa)
	FNYG_06955	Plus3 domain-containing protein. (596 aa)
	FNYG_08263	Uncharacterized protein. (154 aa)
	FNYG_08431	Uncharacterized protein. (293 aa)
	FNYG_09164	Uncharacterized protein. (991 aa)
	FNYG_09792	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (341 aa)
	FNYG_11104	Uncharacterized protein. (546 aa)
	FNYG_11724	Uncharacterized protein. (172 aa)
	FNYG_11912	Uncharacterized protein. (72 aa)
	FNYG_14022	SWIB domain-containing protein. (262 aa)
	FNYG_14334	Uncharacterized protein. (370 aa)
	FNYG_14726	Histone domain-containing protein. (116 aa)
	FNYG_14779	HTH myb-type domain-containing protein. (176 aa)
	FNYG_15004	Histone domain-containing protein. (49 aa)
	FNYG_15188	HTH myb-type domain-containing protein. (176 aa)
	FNYG_00045	Histone H3; Belongs to the histone H3 family. (136 aa)
	FNYG_00335	Uncharacterized protein. (1895 aa)
	FNYG_03120	Uncharacterized protein. (369 aa)
	FNYG_03119	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (265 aa)
	FNYG_03626	Uncharacterized protein. (80 aa)
	FNYG_05037	Uncharacterized protein. (923 aa)
	FNYG_04853	Uncharacterized protein. (439 aa)
	FNYG_04798	Uncharacterized protein. (193 aa)

Your Current Organism:

Fusarium nygamai

NCBI taxonomy Id: 42673
Other names: ATCC 58555, BBA 69862, CBS 749.97, DAOM 225148, F. nygamai, Gibberella nygamai, IMI 375354, NRRL 13448

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FNYG_00045	FNYG_03626	A0A2K0WWD8	A0A2K0WM13	Histone H3; Belongs to the histone H3 family.	Uncharacterized protein.	0.938
FNYG_00045	FNYG_04773	A0A2K0WWD8	A0A2K0WHJ0	Histone H3; Belongs to the histone H3 family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.827
FNYG_00045	FNYG_04853	A0A2K0WWD8	A0A2K0WHR7	Histone H3; Belongs to the histone H3 family.	Uncharacterized protein.	0.653
FNYG_00045	FNYG_06955	A0A2K0WWD8	A0A2K0WBF4	Histone H3; Belongs to the histone H3 family.	Plus3 domain-containing protein.	0.823
FNYG_00045	FNYG_08263	A0A2K0WWD8	A0A2K0W7Q7	Histone H3; Belongs to the histone H3 family.	Uncharacterized protein.	0.939
FNYG_00045	FNYG_09164	A0A2K0WWD8	A0A2K0W4T6	Histone H3; Belongs to the histone H3 family.	Uncharacterized protein.	0.731
FNYG_00045	FNYG_11724	A0A2K0WWD8	A0A2K0VY33	Histone H3; Belongs to the histone H3 family.	Uncharacterized protein.	0.918
FNYG_00045	FNYG_11912	A0A2K0WWD8	A0A2K0VXN5	Histone H3; Belongs to the histone H3 family.	Uncharacterized protein.	0.946
FNYG_00045	FNYG_14022	A0A2K0WWD8	A0A2K0UU94	Histone H3; Belongs to the histone H3 family.	SWIB domain-containing protein.	0.667
FNYG_03119	FNYG_03626	A0A2K0WMQ0	A0A2K0WM13	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	Uncharacterized protein.	0.971
FNYG_03119	FNYG_04773	A0A2K0WMQ0	A0A2K0WHJ0	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.940
FNYG_03119	FNYG_04798	A0A2K0WMQ0	A0A2K0WHL7	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	Uncharacterized protein.	0.987
FNYG_03119	FNYG_05037	A0A2K0WMQ0	A0A2K0WIB1	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	Uncharacterized protein.	0.757
FNYG_03119	FNYG_06445	A0A2K0WMQ0	A0A2K0WD76	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	RNA_pol_L_2 domain-containing protein.	0.986
FNYG_03119	FNYG_08263	A0A2K0WMQ0	A0A2K0W7Q7	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	Uncharacterized protein.	0.980
FNYG_03119	FNYG_11912	A0A2K0WMQ0	A0A2K0VXN5	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	Uncharacterized protein.	0.969
FNYG_03120	FNYG_03626	A0A2K0WMQ7	A0A2K0WM13	Uncharacterized protein.	Uncharacterized protein.	0.971
FNYG_03120	FNYG_04773	A0A2K0WMQ7	A0A2K0WHJ0	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.938
FNYG_03120	FNYG_04798	A0A2K0WMQ7	A0A2K0WHL7	Uncharacterized protein.	Uncharacterized protein.	0.982
FNYG_03120	FNYG_05037	A0A2K0WMQ7	A0A2K0WIB1	Uncharacterized protein.	Uncharacterized protein.	0.757